Gene : Seita.3G144700 S. italica v2.2
Defline:  (1 of 3) PTHR35772:SF1 - PHOTOSYSTEM II REACTION CENTER PROTEIN I Genomic Order:  1447
Name:  ? Seita.3G144700 Secondary Identifier:  ? PAC:32714664
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G144700 0.5kb upstream 0.5kb upstream 611 true scaffold_3: 10239589-10240199 Setaria italica
Seita.3G144700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10239700-10240199 Setaria italica
Seita.3G144700 0.5kb downstream 0.5kb downstream 611 true scaffold_3: 10239089-10239699 Setaria italica
Seita.3G144700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10239089-10239588 Setaria italica
Seita.3G144700 1.0kb upstream 1.0kb upstream 1111 true scaffold_3: 10239589-10240699 Setaria italica
Seita.3G144700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10239700-10240699 Setaria italica
Seita.3G144700 1.0kb downstream 1.0kb downstream 1111 true scaffold_3: 10238589-10239699 Setaria italica
Seita.3G144700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10238589-10239588 Setaria italica
Seita.3G144700 2.0kb upstream 2.0kb upstream 2111 true scaffold_3: 10239589-10241699 Setaria italica
Seita.3G144700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10239700-10241699 Setaria italica
Seita.3G144700 2.0kb downstream 2.0kb downstream 2111 true scaffold_3: 10237589-10239699 Setaria italica
Seita.3G144700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10237589-10239588 Setaria italica
Seita.3G144700 5.0kb upstream 5.0kb upstream 5111 true scaffold_3: 10239589-10244699 Setaria italica
Seita.3G144700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10239700-10244699 Setaria italica
Seita.3G144700 5.0kb downstream 5.0kb downstream 5111 true scaffold_3: 10234589-10239699 Setaria italica
Seita.3G144700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10234589-10239588 Setaria italica
Seita.3G144700 10.0kb upstream 10.0kb upstream 10111 true scaffold_3: 10239589-10249699 Setaria italica
Seita.3G144700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10239700-10249699 Setaria italica
Seita.3G144700 10.0kb downstream 10.0kb downstream 10111 true scaffold_3: 10229589-10239699 Setaria italica
Seita.3G144700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10229589-10239588 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027846 5273 Angiosperm View MSA
122192538 5267 Panicoideae View MSA
124590371 5269 Grass View MSA
121345076 5274 Embryophyte View MSA
123380148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain