Gene : Seita.3G146900 S. italica v2.2
Defline:  (1 of 1) PTHR21330:SF2 - E3 SUMO-PROTEIN LIGASE MMS21 Genomic Order:  1469
Name:  ? Seita.3G146900 Secondary Identifier:  ? PAC:32713160
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G146900 0.5kb upstream 0.5kb upstream 3060 true scaffold_3: 10555723-10558782 Setaria italica
Seita.3G146900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10555723-10556222 Setaria italica
Seita.3G146900 0.5kb downstream 0.5kb downstream 3060 true scaffold_3: 10556223-10559282 Setaria italica
Seita.3G146900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10558783-10559282 Setaria italica
Seita.3G146900 1.0kb upstream 1.0kb upstream 3560 true scaffold_3: 10555223-10558782 Setaria italica
Seita.3G146900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10555223-10556222 Setaria italica
Seita.3G146900 1.0kb downstream 1.0kb downstream 3560 true scaffold_3: 10556223-10559782 Setaria italica
Seita.3G146900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10558783-10559782 Setaria italica
Seita.3G146900 2.0kb upstream 2.0kb upstream 4560 true scaffold_3: 10554223-10558782 Setaria italica
Seita.3G146900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10554223-10556222 Setaria italica
Seita.3G146900 2.0kb downstream 2.0kb downstream 4560 true scaffold_3: 10556223-10560782 Setaria italica
Seita.3G146900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10558783-10560782 Setaria italica
Seita.3G146900 5.0kb upstream 5.0kb upstream 7560 true scaffold_3: 10551223-10558782 Setaria italica
Seita.3G146900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10551223-10556222 Setaria italica
Seita.3G146900 5.0kb downstream 5.0kb downstream 7560 true scaffold_3: 10556223-10563782 Setaria italica
Seita.3G146900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10558783-10563782 Setaria italica
Seita.3G146900 10.0kb upstream 10.0kb upstream 12560 true scaffold_3: 10546223-10558782 Setaria italica
Seita.3G146900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10546223-10556222 Setaria italica
Seita.3G146900 10.0kb downstream 10.0kb downstream 12560 true scaffold_3: 10556223-10568782 Setaria italica
Seita.3G146900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10558783-10568782 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186350 5267 Panicoideae View MSA
124581764 5269 Grass View MSA
122044966 5273 Angiosperm View MSA
121344157 5274 Embryophyte View MSA
123424394 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.054        
cufflinks 10.956       High
cufflinks 5.685        
cufflinks 5.243        
cufflinks 3.98       Low
cufflinks 10.857       High
cufflinks 5.633        
cufflinks 5.916        
cufflinks 5.308        
cufflinks 8.108        
cufflinks 6.069        
cufflinks 7.694        
cufflinks 6.708        
cufflinks 7.382        
cufflinks 7.927        
cufflinks 5.815        
cufflinks 9.895       High
cufflinks 7.768        
cufflinks 4.44       Low
cufflinks 8.932        

0 Strain