Gene : Seita.3G147000 S. italica v2.2
Defline:  (1 of 1) PTHR31384:SF5 - AUXIN RESPONSE FACTOR 3 Genomic Order:  1470
Name:  ? Seita.3G147000 Secondary Identifier:  ? PAC:32712252
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G147000 0.5kb upstream 0.5kb upstream 4999 true scaffold_3: 10559752-10564750 Setaria italica
Seita.3G147000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10564251-10564750 Setaria italica
Seita.3G147000 0.5kb downstream 0.5kb downstream 4999 true scaffold_3: 10559252-10564250 Setaria italica
Seita.3G147000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10559252-10559751 Setaria italica
Seita.3G147000 1.0kb upstream 1.0kb upstream 5499 true scaffold_3: 10559752-10565250 Setaria italica
Seita.3G147000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10564251-10565250 Setaria italica
Seita.3G147000 1.0kb downstream 1.0kb downstream 5499 true scaffold_3: 10558752-10564250 Setaria italica
Seita.3G147000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10558752-10559751 Setaria italica
Seita.3G147000 2.0kb upstream 2.0kb upstream 6499 true scaffold_3: 10559752-10566250 Setaria italica
Seita.3G147000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10564251-10566250 Setaria italica
Seita.3G147000 2.0kb downstream 2.0kb downstream 6499 true scaffold_3: 10557752-10564250 Setaria italica
Seita.3G147000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10557752-10559751 Setaria italica
Seita.3G147000 5.0kb upstream 5.0kb upstream 9499 true scaffold_3: 10559752-10569250 Setaria italica
Seita.3G147000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10564251-10569250 Setaria italica
Seita.3G147000 5.0kb downstream 5.0kb downstream 9499 true scaffold_3: 10554752-10564250 Setaria italica
Seita.3G147000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10554752-10559751 Setaria italica
Seita.3G147000 10.0kb upstream 10.0kb upstream 14499 true scaffold_3: 10559752-10574250 Setaria italica
Seita.3G147000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10564251-10574250 Setaria italica
Seita.3G147000 10.0kb downstream 10.0kb downstream 14499 true scaffold_3: 10549752-10564250 Setaria italica
Seita.3G147000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10549752-10559751 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185758 5267 Panicoideae View MSA
124579390 5269 Grass View MSA
122043529 5273 Angiosperm View MSA
121310144 5274 Embryophyte View MSA
123347713 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.939     High  
cufflinks 26.61     High High
cufflinks 6.997        
cufflinks 8.496        
cufflinks 10.264        
cufflinks 31.955     High High
cufflinks 29.029     High High
cufflinks 19.513     High  
cufflinks 18.103     High  
cufflinks 16.211     High  
cufflinks 27.455     High High
cufflinks 4.864       Low
cufflinks 13.367        
cufflinks 5.063       Low
cufflinks 9.758        
cufflinks 16.978     High  
cufflinks 6.811        
cufflinks 8.024        
cufflinks 5.794       Low
cufflinks 6.349       Low

0 Strain