Gene : Seita.3G147400 S. italica v2.2
Defline:  (1 of 2) PF05066 - HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) Genomic Order:  1474
Name:  ? Seita.3G147400 Secondary Identifier:  ? PAC:32712153
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G147400 0.5kb upstream 0.5kb upstream 11906 true scaffold_3: 10613824-10625729 Setaria italica
Seita.3G147400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10613824-10614323 Setaria italica
Seita.3G147400 0.5kb downstream 0.5kb downstream 11906 true scaffold_3: 10614324-10626229 Setaria italica
Seita.3G147400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10625730-10626229 Setaria italica
Seita.3G147400 1.0kb upstream 1.0kb upstream 12406 true scaffold_3: 10613324-10625729 Setaria italica
Seita.3G147400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10613324-10614323 Setaria italica
Seita.3G147400 1.0kb downstream 1.0kb downstream 12406 true scaffold_3: 10614324-10626729 Setaria italica
Seita.3G147400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10625730-10626729 Setaria italica
Seita.3G147400 2.0kb upstream 2.0kb upstream 13406 true scaffold_3: 10612324-10625729 Setaria italica
Seita.3G147400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10612324-10614323 Setaria italica
Seita.3G147400 2.0kb downstream 2.0kb downstream 13406 true scaffold_3: 10614324-10627729 Setaria italica
Seita.3G147400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10625730-10627729 Setaria italica
Seita.3G147400 5.0kb upstream 5.0kb upstream 16406 true scaffold_3: 10609324-10625729 Setaria italica
Seita.3G147400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10609324-10614323 Setaria italica
Seita.3G147400 5.0kb downstream 5.0kb downstream 16406 true scaffold_3: 10614324-10630729 Setaria italica
Seita.3G147400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10625730-10630729 Setaria italica
Seita.3G147400 10.0kb upstream 10.0kb upstream 21406 true scaffold_3: 10604324-10625729 Setaria italica
Seita.3G147400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10604324-10614323 Setaria italica
Seita.3G147400 10.0kb downstream 10.0kb downstream 21406 true scaffold_3: 10614324-10635729 Setaria italica
Seita.3G147400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10625730-10635729 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190912 5267 Panicoideae View MSA
124585412 5269 Grass View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.786     High High
cufflinks 20.132     High  
cufflinks 15.867     High  
cufflinks 11.989     High  
cufflinks 10.2       Low
cufflinks 19.682     High  
cufflinks 17.695     High  
cufflinks 12.22        
cufflinks 13.071     High  
cufflinks 7.365       Low
cufflinks 18.983     High  
cufflinks 17.898     High  
cufflinks 15.275     High  
cufflinks 17.673     High  
cufflinks 22.533     High  
cufflinks 22.442     High  
cufflinks 12.236        
cufflinks 33.473     High High
cufflinks 13.084     High  
cufflinks 14.43        

0 Strain