Gene : Seita.3G150300 S. italica v2.2
Defline:  (1 of 1) PTHR21349:SF0 - 39S RIBOSOMAL PROTEIN L21, MITOCHONDRIAL Genomic Order:  1503
Name:  ? Seita.3G150300 Secondary Identifier:  ? PAC:32712483
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G150300 0.5kb upstream 0.5kb upstream 3337 true scaffold_3: 10844885-10848221 Setaria italica
Seita.3G150300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10844885-10845384 Setaria italica
Seita.3G150300 0.5kb downstream 0.5kb downstream 3337 true scaffold_3: 10845385-10848721 Setaria italica
Seita.3G150300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10848222-10848721 Setaria italica
Seita.3G150300 1.0kb upstream 1.0kb upstream 3837 true scaffold_3: 10844385-10848221 Setaria italica
Seita.3G150300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10844385-10845384 Setaria italica
Seita.3G150300 1.0kb downstream 1.0kb downstream 3837 true scaffold_3: 10845385-10849221 Setaria italica
Seita.3G150300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10848222-10849221 Setaria italica
Seita.3G150300 2.0kb upstream 2.0kb upstream 4837 true scaffold_3: 10843385-10848221 Setaria italica
Seita.3G150300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10843385-10845384 Setaria italica
Seita.3G150300 2.0kb downstream 2.0kb downstream 4837 true scaffold_3: 10845385-10850221 Setaria italica
Seita.3G150300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10848222-10850221 Setaria italica
Seita.3G150300 5.0kb upstream 5.0kb upstream 7837 true scaffold_3: 10840385-10848221 Setaria italica
Seita.3G150300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10840385-10845384 Setaria italica
Seita.3G150300 5.0kb downstream 5.0kb downstream 7837 true scaffold_3: 10845385-10853221 Setaria italica
Seita.3G150300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10848222-10853221 Setaria italica
Seita.3G150300 10.0kb upstream 10.0kb upstream 12837 true scaffold_3: 10835385-10848221 Setaria italica
Seita.3G150300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10835385-10845384 Setaria italica
Seita.3G150300 10.0kb downstream 10.0kb downstream 12837 true scaffold_3: 10845385-10858221 Setaria italica
Seita.3G150300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10848222-10858221 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181223 5267 Panicoideae View MSA
124576451 5269 Grass View MSA
122045710 5273 Angiosperm View MSA
121350514 5274 Embryophyte View MSA
123424430 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.047        
cufflinks 10.847       High
cufflinks 4.333        
cufflinks 2.913       Low
cufflinks 3.496       Low
cufflinks 10.349        
cufflinks 4.389        
cufflinks 8.851        
cufflinks 6.152        
cufflinks 10.847       High
cufflinks 6.8        
cufflinks 9.531        
cufflinks 6.578        
cufflinks 7.392        
cufflinks 9.222        
cufflinks 3.544       Low
cufflinks 13.013       High
cufflinks 6.643        
cufflinks 2.975       Low
cufflinks 11.689       High

0 Strain