Gene : Seita.3G150100 S. italica v2.2
Defline:  (1 of 3) PTHR23105:SF31 - RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1501
Name:  ? Seita.3G150100 Secondary Identifier:  ? PAC:32712050
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G150100 0.5kb upstream 0.5kb upstream 2734 true scaffold_3: 10837864-10840597 Setaria italica
Seita.3G150100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10837864-10838363 Setaria italica
Seita.3G150100 0.5kb downstream 0.5kb downstream 2734 true scaffold_3: 10838364-10841097 Setaria italica
Seita.3G150100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10840598-10841097 Setaria italica
Seita.3G150100 1.0kb upstream 1.0kb upstream 3234 true scaffold_3: 10837364-10840597 Setaria italica
Seita.3G150100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10837364-10838363 Setaria italica
Seita.3G150100 1.0kb downstream 1.0kb downstream 3234 true scaffold_3: 10838364-10841597 Setaria italica
Seita.3G150100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10840598-10841597 Setaria italica
Seita.3G150100 2.0kb upstream 2.0kb upstream 4234 true scaffold_3: 10836364-10840597 Setaria italica
Seita.3G150100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10836364-10838363 Setaria italica
Seita.3G150100 2.0kb downstream 2.0kb downstream 4234 true scaffold_3: 10838364-10842597 Setaria italica
Seita.3G150100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10840598-10842597 Setaria italica
Seita.3G150100 5.0kb upstream 5.0kb upstream 7234 true scaffold_3: 10833364-10840597 Setaria italica
Seita.3G150100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10833364-10838363 Setaria italica
Seita.3G150100 5.0kb downstream 5.0kb downstream 7234 true scaffold_3: 10838364-10845597 Setaria italica
Seita.3G150100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10840598-10845597 Setaria italica
Seita.3G150100 10.0kb upstream 10.0kb upstream 12234 true scaffold_3: 10828364-10840597 Setaria italica
Seita.3G150100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10828364-10838363 Setaria italica
Seita.3G150100 10.0kb downstream 10.0kb downstream 12234 true scaffold_3: 10838364-10850597 Setaria italica
Seita.3G150100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10840598-10850597 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176575 5267 Panicoideae View MSA
124590216 5269 Grass View MSA
122042558 5273 Angiosperm View MSA
121347008 5274 Embryophyte View MSA
123426351 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.028     High  
cufflinks 27.492     High High
cufflinks 10.8     High  
cufflinks 6.214       Low
cufflinks 9.621        
cufflinks 33.74     High High
cufflinks 15.198     High  
cufflinks 25.934     High  
cufflinks 23.907     High  
cufflinks 8.655       Low
cufflinks 23.894     High  
cufflinks 21.247     High  
cufflinks 7.359       Low
cufflinks 16.941     High  
cufflinks 26.81     High  
cufflinks 9.763        
cufflinks 30.81     High High
cufflinks 15.391     High  
cufflinks 9.138       Low
cufflinks 24.034     High  

0 Strain