Gene : Seita.3G153300 S. italica v2.2
Defline:  (1 of 2) PTHR22942:SF41 - DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL Genomic Order:  1533
Name:  ? Seita.3G153300 Secondary Identifier:  ? PAC:32710225
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G153300 0.5kb upstream 0.5kb upstream 4146 true scaffold_3: 11083426-11087571 Setaria italica
Seita.3G153300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11087072-11087571 Setaria italica
Seita.3G153300 0.5kb downstream 0.5kb downstream 4146 true scaffold_3: 11082926-11087071 Setaria italica
Seita.3G153300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11082926-11083425 Setaria italica
Seita.3G153300 1.0kb upstream 1.0kb upstream 4646 true scaffold_3: 11083426-11088071 Setaria italica
Seita.3G153300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11087072-11088071 Setaria italica
Seita.3G153300 1.0kb downstream 1.0kb downstream 4646 true scaffold_3: 11082426-11087071 Setaria italica
Seita.3G153300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11082426-11083425 Setaria italica
Seita.3G153300 2.0kb upstream 2.0kb upstream 5646 true scaffold_3: 11083426-11089071 Setaria italica
Seita.3G153300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11087072-11089071 Setaria italica
Seita.3G153300 2.0kb downstream 2.0kb downstream 5646 true scaffold_3: 11081426-11087071 Setaria italica
Seita.3G153300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11081426-11083425 Setaria italica
Seita.3G153300 5.0kb upstream 5.0kb upstream 8646 true scaffold_3: 11083426-11092071 Setaria italica
Seita.3G153300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11087072-11092071 Setaria italica
Seita.3G153300 5.0kb downstream 5.0kb downstream 8646 true scaffold_3: 11078426-11087071 Setaria italica
Seita.3G153300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11078426-11083425 Setaria italica
Seita.3G153300 10.0kb upstream 10.0kb upstream 13646 true scaffold_3: 11083426-11097071 Setaria italica
Seita.3G153300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11087072-11097071 Setaria italica
Seita.3G153300 10.0kb downstream 10.0kb downstream 13646 true scaffold_3: 11073426-11087071 Setaria italica
Seita.3G153300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 11073426-11083425 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026428 5273 Angiosperm View MSA
122184602 5267 Panicoideae View MSA
124582078 5269 Grass View MSA
121296323 5274 Embryophyte View MSA
123334505 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.349        
cufflinks 0.472        
cufflinks 0.551        
cufflinks 0.288       Low
cufflinks 0.326        
cufflinks 0.505        
cufflinks 0.385        
cufflinks 0.442        
cufflinks 0.451        
cufflinks 0.272     Low Low
cufflinks 0.397        
cufflinks 0.954       High
cufflinks 0.411        
cufflinks 0.744        
cufflinks 0.827       High
cufflinks 0.419        
cufflinks 0.993       High
cufflinks 0.429        
cufflinks 0.363        
cufflinks 1.692       High

0 Strain