Gene : Seita.3G152100 S. italica v2.2
Defline:  (1 of 6) 2.3.1.20//2.3.1.75 - Diacylglycerol O-acyltransferase / Diglyceride acyltransferase // Long-chain-alcohol O-fatty-acyltransferase / Wax synthase Genomic Order:  1521
Name:  ? Seita.3G152100 Secondary Identifier:  ? PAC:32713190
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5885 Setaria italica pathologic  
Sitalica TRIGLSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G152100 0.5kb upstream 0.5kb upstream 4975 true scaffold_3: 11006041-11011015 Setaria italica
Seita.3G152100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11010516-11011015 Setaria italica
Seita.3G152100 0.5kb downstream 0.5kb downstream 4975 true scaffold_3: 11005541-11010515 Setaria italica
Seita.3G152100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11005541-11006040 Setaria italica
Seita.3G152100 1.0kb upstream 1.0kb upstream 5475 true scaffold_3: 11006041-11011515 Setaria italica
Seita.3G152100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11010516-11011515 Setaria italica
Seita.3G152100 1.0kb downstream 1.0kb downstream 5475 true scaffold_3: 11005041-11010515 Setaria italica
Seita.3G152100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11005041-11006040 Setaria italica
Seita.3G152100 2.0kb upstream 2.0kb upstream 6475 true scaffold_3: 11006041-11012515 Setaria italica
Seita.3G152100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11010516-11012515 Setaria italica
Seita.3G152100 2.0kb downstream 2.0kb downstream 6475 true scaffold_3: 11004041-11010515 Setaria italica
Seita.3G152100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11004041-11006040 Setaria italica
Seita.3G152100 5.0kb upstream 5.0kb upstream 9475 true scaffold_3: 11006041-11015515 Setaria italica
Seita.3G152100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11010516-11015515 Setaria italica
Seita.3G152100 5.0kb downstream 5.0kb downstream 9475 true scaffold_3: 11001041-11010515 Setaria italica
Seita.3G152100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11001041-11006040 Setaria italica
Seita.3G152100 10.0kb upstream 10.0kb upstream 14475 true scaffold_3: 11006041-11020515 Setaria italica
Seita.3G152100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11010516-11020515 Setaria italica
Seita.3G152100 10.0kb downstream 10.0kb downstream 14475 true scaffold_3: 10996041-11010515 Setaria italica
Seita.3G152100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10996041-11006040 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190658 5267 Panicoideae View MSA
124579329 5269 Grass View MSA
122046091 5273 Angiosperm View MSA
123428993 5275 Viridiplantae View MSA
121351027 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.398        
cufflinks 0.106     Low Low
cufflinks 20.104     High  
cufflinks 16.461     High  
cufflinks 6.366        
cufflinks 0.207       Low
cufflinks 7.496        
cufflinks 6.698        
cufflinks 2.001        
cufflinks 7.836        
cufflinks 6.343        
cufflinks 8.014        
cufflinks 9.713        
cufflinks 34.913     High High
cufflinks 14.598     High  
cufflinks 4.942        
cufflinks 16.498     High  
cufflinks 4.588        
cufflinks 24.512     High  
cufflinks 10.652        

0 Strain