Gene : Seita.3G155100 S. italica v2.2
Defline:  (1 of 1) PTHR11926//PTHR11926:SF306 - GLUCOSYL/GLUCURONOSYL TRANSFERASES Genomic Order:  1551
Name:  ? Seita.3G155100 Secondary Identifier:  ? PAC:32712055
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5968 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G155100 0.5kb upstream 0.5kb upstream 2056 true scaffold_3: 11252036-11254091 Setaria italica
Seita.3G155100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11252036-11252535 Setaria italica
Seita.3G155100 0.5kb downstream 0.5kb downstream 2056 true scaffold_3: 11252536-11254591 Setaria italica
Seita.3G155100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11254092-11254591 Setaria italica
Seita.3G155100 1.0kb upstream 1.0kb upstream 2556 true scaffold_3: 11251536-11254091 Setaria italica
Seita.3G155100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11251536-11252535 Setaria italica
Seita.3G155100 1.0kb downstream 1.0kb downstream 2556 true scaffold_3: 11252536-11255091 Setaria italica
Seita.3G155100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11254092-11255091 Setaria italica
Seita.3G155100 2.0kb upstream 2.0kb upstream 3556 true scaffold_3: 11250536-11254091 Setaria italica
Seita.3G155100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11250536-11252535 Setaria italica
Seita.3G155100 2.0kb downstream 2.0kb downstream 3556 true scaffold_3: 11252536-11256091 Setaria italica
Seita.3G155100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11254092-11256091 Setaria italica
Seita.3G155100 5.0kb upstream 5.0kb upstream 6556 true scaffold_3: 11247536-11254091 Setaria italica
Seita.3G155100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11247536-11252535 Setaria italica
Seita.3G155100 5.0kb downstream 5.0kb downstream 6556 true scaffold_3: 11252536-11259091 Setaria italica
Seita.3G155100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11254092-11259091 Setaria italica
Seita.3G155100 10.0kb upstream 10.0kb upstream 11556 true scaffold_3: 11242536-11254091 Setaria italica
Seita.3G155100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11242536-11252535 Setaria italica
Seita.3G155100 10.0kb downstream 10.0kb downstream 11556 true scaffold_3: 11252536-11264091 Setaria italica
Seita.3G155100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 11254092-11264091 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992842 5273 Angiosperm View MSA
122176577 5267 Panicoideae View MSA
124572512 5269 Grass View MSA
121263168 5274 Embryophyte View MSA
123428681 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.275        
cufflinks 0.139        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low Low
cufflinks 0.457        
cufflinks 0.271        
cufflinks 0.269        
cufflinks 0.024     Low Low
cufflinks 1.545       High
cufflinks 0.677        
cufflinks 0.184        
cufflinks 0.064     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.589        
cufflinks 0.838        
cufflinks 0.377        
cufflinks 0.374        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.699        

0 Strain