Gene : Seita.3G153700 S. italica v2.2
Defline:  (1 of 1) PTHR15492:SF1 - CYCLIN-D1-BINDING PROTEIN 1 Genomic Order:  1537
Name:  ? Seita.3G153700 Secondary Identifier:  ? PAC:32711405
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G153700 0.5kb upstream 0.5kb upstream 2978 true scaffold_3: 11138650-11141627 Setaria italica
Seita.3G153700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11141128-11141627 Setaria italica
Seita.3G153700 0.5kb downstream 0.5kb downstream 2978 true scaffold_3: 11138150-11141127 Setaria italica
Seita.3G153700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11138150-11138649 Setaria italica
Seita.3G153700 1.0kb upstream 1.0kb upstream 3478 true scaffold_3: 11138650-11142127 Setaria italica
Seita.3G153700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11141128-11142127 Setaria italica
Seita.3G153700 1.0kb downstream 1.0kb downstream 3478 true scaffold_3: 11137650-11141127 Setaria italica
Seita.3G153700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11137650-11138649 Setaria italica
Seita.3G153700 2.0kb upstream 2.0kb upstream 4478 true scaffold_3: 11138650-11143127 Setaria italica
Seita.3G153700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11141128-11143127 Setaria italica
Seita.3G153700 2.0kb downstream 2.0kb downstream 4478 true scaffold_3: 11136650-11141127 Setaria italica
Seita.3G153700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11136650-11138649 Setaria italica
Seita.3G153700 5.0kb upstream 5.0kb upstream 7478 true scaffold_3: 11138650-11146127 Setaria italica
Seita.3G153700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11141128-11146127 Setaria italica
Seita.3G153700 5.0kb downstream 5.0kb downstream 7478 true scaffold_3: 11133650-11141127 Setaria italica
Seita.3G153700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11133650-11138649 Setaria italica
Seita.3G153700 10.0kb upstream 10.0kb upstream 12478 true scaffold_3: 11138650-11151127 Setaria italica
Seita.3G153700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11141128-11151127 Setaria italica
Seita.3G153700 10.0kb downstream 10.0kb downstream 12478 true scaffold_3: 11128650-11141127 Setaria italica
Seita.3G153700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 11128650-11138649 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180875 5267 Panicoideae View MSA
124574251 5269 Grass View MSA
122041727 5273 Angiosperm View MSA
121346994 5274 Embryophyte View MSA
123425280 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.772        
cufflinks 10.336       High
cufflinks 7.136        
cufflinks 6.689        
cufflinks 6.922        
cufflinks 10.315       High
cufflinks 6.347       Low
cufflinks 6.041       Low
cufflinks 7.505        
cufflinks 7.428        
cufflinks 8.608        
cufflinks 8.656        
cufflinks 6.952        
cufflinks 8.089        
cufflinks 7.767        
cufflinks 8.012        
cufflinks 9.396        
cufflinks 12.905     High High
cufflinks 6.469       Low
cufflinks 6.835        

0 Strain