Gene : Seita.3G160600 S. italica v2.2
Defline:  (1 of 1) PTHR10840 - PROGRAMMED CELL DEATH PROTEIN 5 Genomic Order:  1606
Name:  ? Seita.3G160600 Secondary Identifier:  ? PAC:32711948
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G160600 0.5kb upstream 0.5kb upstream 4444 true scaffold_3: 11663771-11668214 Setaria italica
Seita.3G160600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11663771-11664270 Setaria italica
Seita.3G160600 0.5kb downstream 0.5kb downstream 4444 true scaffold_3: 11664271-11668714 Setaria italica
Seita.3G160600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11668215-11668714 Setaria italica
Seita.3G160600 1.0kb upstream 1.0kb upstream 4944 true scaffold_3: 11663271-11668214 Setaria italica
Seita.3G160600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11663271-11664270 Setaria italica
Seita.3G160600 1.0kb downstream 1.0kb downstream 4944 true scaffold_3: 11664271-11669214 Setaria italica
Seita.3G160600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11668215-11669214 Setaria italica
Seita.3G160600 2.0kb upstream 2.0kb upstream 5944 true scaffold_3: 11662271-11668214 Setaria italica
Seita.3G160600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11662271-11664270 Setaria italica
Seita.3G160600 2.0kb downstream 2.0kb downstream 5944 true scaffold_3: 11664271-11670214 Setaria italica
Seita.3G160600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11668215-11670214 Setaria italica
Seita.3G160600 5.0kb upstream 5.0kb upstream 8944 true scaffold_3: 11659271-11668214 Setaria italica
Seita.3G160600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11659271-11664270 Setaria italica
Seita.3G160600 5.0kb downstream 5.0kb downstream 8944 true scaffold_3: 11664271-11673214 Setaria italica
Seita.3G160600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11668215-11673214 Setaria italica
Seita.3G160600 10.0kb upstream 10.0kb upstream 13944 true scaffold_3: 11654271-11668214 Setaria italica
Seita.3G160600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11654271-11664270 Setaria italica
Seita.3G160600 10.0kb downstream 10.0kb downstream 13944 true scaffold_3: 11664271-11678214 Setaria italica
Seita.3G160600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 11668215-11678214 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178586 5267 Panicoideae View MSA
124568316 5269 Grass View MSA
122044055 5273 Angiosperm View MSA
121343869 5274 Embryophyte View MSA
123426803 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.084     High  
cufflinks 12.977        
cufflinks 13.171     High  
cufflinks 13.866     High  
cufflinks 10.699     High  
cufflinks 14.749     High  
cufflinks 11.007        
cufflinks 20.486     High  
cufflinks 11.062        
cufflinks 22.803     High High
cufflinks 12.65        
cufflinks 17.098     High  
cufflinks 24.825     High High
cufflinks 20.176     High  
cufflinks 17.958     High  
cufflinks 6.857       Low
cufflinks 21.657     High High
cufflinks 7.275       Low
cufflinks 21.622     High High
cufflinks 18.863     High  

0 Strain