Gene : Seita.3G163600 S. italica v2.2
Defline:  (1 of 2) PTHR12855:SF10 - DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 Genomic Order:  1636
Name:  ? Seita.3G163600 Secondary Identifier:  ? PAC:32712655
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G163600 0.5kb upstream 0.5kb upstream 6574 true scaffold_3: 11960965-11967538 Setaria italica
Seita.3G163600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11967039-11967538 Setaria italica
Seita.3G163600 0.5kb downstream 0.5kb downstream 6574 true scaffold_3: 11960465-11967038 Setaria italica
Seita.3G163600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11960465-11960964 Setaria italica
Seita.3G163600 1.0kb upstream 1.0kb upstream 7074 true scaffold_3: 11960965-11968038 Setaria italica
Seita.3G163600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11967039-11968038 Setaria italica
Seita.3G163600 1.0kb downstream 1.0kb downstream 7074 true scaffold_3: 11959965-11967038 Setaria italica
Seita.3G163600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11959965-11960964 Setaria italica
Seita.3G163600 2.0kb upstream 2.0kb upstream 8074 true scaffold_3: 11960965-11969038 Setaria italica
Seita.3G163600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11967039-11969038 Setaria italica
Seita.3G163600 2.0kb downstream 2.0kb downstream 8074 true scaffold_3: 11958965-11967038 Setaria italica
Seita.3G163600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11958965-11960964 Setaria italica
Seita.3G163600 5.0kb upstream 5.0kb upstream 11074 true scaffold_3: 11960965-11972038 Setaria italica
Seita.3G163600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11967039-11972038 Setaria italica
Seita.3G163600 5.0kb downstream 5.0kb downstream 11074 true scaffold_3: 11955965-11967038 Setaria italica
Seita.3G163600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11955965-11960964 Setaria italica
Seita.3G163600 10.0kb upstream 10.0kb upstream 16074 true scaffold_3: 11960965-11977038 Setaria italica
Seita.3G163600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11967039-11977038 Setaria italica
Seita.3G163600 10.0kb downstream 10.0kb downstream 16074 true scaffold_3: 11950965-11967038 Setaria italica
Seita.3G163600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 11950965-11960964 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175446 5267 Panicoideae View MSA
124580157 5269 Grass View MSA
122041546 5273 Angiosperm View MSA
123429045 5275 Viridiplantae View MSA
121347026 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.783       High
cufflinks 11.083        
cufflinks 9.576        
cufflinks 7.644        
cufflinks 6.761       Low
cufflinks 11.145        
cufflinks 9.264        
cufflinks 7.86        
cufflinks 7.779        
cufflinks 6.991        
cufflinks 9.111        
cufflinks 8.214        
cufflinks 7.099        
cufflinks 6.761       Low
cufflinks 9.42        
cufflinks 13.214     High High
cufflinks 8.393        
cufflinks 15.088     High High
cufflinks 5.936       Low
cufflinks 8.358        

0 Strain