Gene : Seita.3G162300 S. italica v2.2
Defline:  (1 of 1) PTHR10410:SF2 - LYS-63-SPECIFIC DEUBIQUITINASE BRCC36 Genomic Order:  1623
Name:  ? Seita.3G162300 Secondary Identifier:  ? PAC:32710021
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G162300 0.5kb upstream 0.5kb upstream 5962 true scaffold_3: 11827321-11833282 Setaria italica
Seita.3G162300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11832783-11833282 Setaria italica
Seita.3G162300 0.5kb downstream 0.5kb downstream 5962 true scaffold_3: 11826821-11832782 Setaria italica
Seita.3G162300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11826821-11827320 Setaria italica
Seita.3G162300 1.0kb upstream 1.0kb upstream 6462 true scaffold_3: 11827321-11833782 Setaria italica
Seita.3G162300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11832783-11833782 Setaria italica
Seita.3G162300 1.0kb downstream 1.0kb downstream 6462 true scaffold_3: 11826321-11832782 Setaria italica
Seita.3G162300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11826321-11827320 Setaria italica
Seita.3G162300 2.0kb upstream 2.0kb upstream 7462 true scaffold_3: 11827321-11834782 Setaria italica
Seita.3G162300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11832783-11834782 Setaria italica
Seita.3G162300 2.0kb downstream 2.0kb downstream 7462 true scaffold_3: 11825321-11832782 Setaria italica
Seita.3G162300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11825321-11827320 Setaria italica
Seita.3G162300 5.0kb upstream 5.0kb upstream 10462 true scaffold_3: 11827321-11837782 Setaria italica
Seita.3G162300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11832783-11837782 Setaria italica
Seita.3G162300 5.0kb downstream 5.0kb downstream 10462 true scaffold_3: 11822321-11832782 Setaria italica
Seita.3G162300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11822321-11827320 Setaria italica
Seita.3G162300 10.0kb upstream 10.0kb upstream 15462 true scaffold_3: 11827321-11842782 Setaria italica
Seita.3G162300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11832783-11842782 Setaria italica
Seita.3G162300 10.0kb downstream 10.0kb downstream 15462 true scaffold_3: 11817321-11832782 Setaria italica
Seita.3G162300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 11817321-11827320 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177878 5267 Panicoideae View MSA
124581004 5269 Grass View MSA
122043403 5273 Angiosperm View MSA
121344026 5274 Embryophyte View MSA
123428720 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.429     High High
cufflinks 10.882        
cufflinks 14.345     High  
cufflinks 16.965     High High
cufflinks 13.378     High  
cufflinks 11.346        
cufflinks 9.341       Low
cufflinks 11.583        
cufflinks 8.689       Low
cufflinks 16.626     High  
cufflinks 13.624     High  
cufflinks 13.442        
cufflinks 19.656     High High
cufflinks 10.781        
cufflinks 13.888        
cufflinks 13.149     High  
cufflinks 15.672     High  
cufflinks 18.453     High High
cufflinks 11.761     High  
cufflinks 12.709        

0 Strain