Gene : Seita.3G163900 S. italica v2.2
Defline:  (1 of 1) PTHR11081:SF9 - FLAP ENDONUCLEASE 1 Genomic Order:  1639
Name:  ? Seita.3G163900 Secondary Identifier:  ? PAC:32709941
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G163900 0.5kb upstream 0.5kb upstream 4720 true scaffold_3: 11978106-11982825 Setaria italica
Seita.3G163900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 11978106-11978605 Setaria italica
Seita.3G163900 0.5kb downstream 0.5kb downstream 4720 true scaffold_3: 11978606-11983325 Setaria italica
Seita.3G163900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 11982826-11983325 Setaria italica
Seita.3G163900 1.0kb upstream 1.0kb upstream 5220 true scaffold_3: 11977606-11982825 Setaria italica
Seita.3G163900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 11977606-11978605 Setaria italica
Seita.3G163900 1.0kb downstream 1.0kb downstream 5220 true scaffold_3: 11978606-11983825 Setaria italica
Seita.3G163900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 11982826-11983825 Setaria italica
Seita.3G163900 2.0kb upstream 2.0kb upstream 6220 true scaffold_3: 11976606-11982825 Setaria italica
Seita.3G163900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 11976606-11978605 Setaria italica
Seita.3G163900 2.0kb downstream 2.0kb downstream 6220 true scaffold_3: 11978606-11984825 Setaria italica
Seita.3G163900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 11982826-11984825 Setaria italica
Seita.3G163900 5.0kb upstream 5.0kb upstream 9220 true scaffold_3: 11973606-11982825 Setaria italica
Seita.3G163900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 11973606-11978605 Setaria italica
Seita.3G163900 5.0kb downstream 5.0kb downstream 9220 true scaffold_3: 11978606-11987825 Setaria italica
Seita.3G163900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 11982826-11987825 Setaria italica
Seita.3G163900 10.0kb upstream 10.0kb upstream 14220 true scaffold_3: 11968606-11982825 Setaria italica
Seita.3G163900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 11968606-11978605 Setaria italica
Seita.3G163900 10.0kb downstream 10.0kb downstream 14220 true scaffold_3: 11978606-11992825 Setaria italica
Seita.3G163900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 11982826-11992825 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185387 5267 Panicoideae View MSA
124568841 5269 Grass View MSA
122045143 5273 Angiosperm View MSA
121348118 5274 Embryophyte View MSA
123424263 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.074        
cufflinks 6.543       High
cufflinks 3.198        
cufflinks 2.764       Low
cufflinks 2.162       Low
cufflinks 6.173       High
cufflinks 3.823        
cufflinks 5.144        
cufflinks 4.318        
cufflinks 3.841        
cufflinks 4.138        
cufflinks 6.03       High
cufflinks 4.082        
cufflinks 4.731        
cufflinks 6.34       High
cufflinks 2.956       Low
cufflinks 7.038       High
cufflinks 4.14        
cufflinks 2.649       Low
cufflinks 6.019       High

0 Strain