Gene : Seita.3G168800 S. italica v2.2
Defline:  (1 of 3) PTHR24343//PTHR24343:SF183 - SERINE/THREONINE KINASE Genomic Order:  1688
Name:  ? Seita.3G168800 Secondary Identifier:  ? PAC:32713591
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G168800 0.5kb upstream 0.5kb upstream 4791 true scaffold_3: 12427318-12432108 Setaria italica
Seita.3G168800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12427318-12427817 Setaria italica
Seita.3G168800 0.5kb downstream 0.5kb downstream 4791 true scaffold_3: 12427818-12432608 Setaria italica
Seita.3G168800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12432109-12432608 Setaria italica
Seita.3G168800 1.0kb upstream 1.0kb upstream 5291 true scaffold_3: 12426818-12432108 Setaria italica
Seita.3G168800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12426818-12427817 Setaria italica
Seita.3G168800 1.0kb downstream 1.0kb downstream 5291 true scaffold_3: 12427818-12433108 Setaria italica
Seita.3G168800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12432109-12433108 Setaria italica
Seita.3G168800 2.0kb upstream 2.0kb upstream 6291 true scaffold_3: 12425818-12432108 Setaria italica
Seita.3G168800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12425818-12427817 Setaria italica
Seita.3G168800 2.0kb downstream 2.0kb downstream 6291 true scaffold_3: 12427818-12434108 Setaria italica
Seita.3G168800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12432109-12434108 Setaria italica
Seita.3G168800 5.0kb upstream 5.0kb upstream 9291 true scaffold_3: 12422818-12432108 Setaria italica
Seita.3G168800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12422818-12427817 Setaria italica
Seita.3G168800 5.0kb downstream 5.0kb downstream 9291 true scaffold_3: 12427818-12437108 Setaria italica
Seita.3G168800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12432109-12437108 Setaria italica
Seita.3G168800 10.0kb upstream 10.0kb upstream 14291 true scaffold_3: 12417818-12432108 Setaria italica
Seita.3G168800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12417818-12427817 Setaria italica
Seita.3G168800 10.0kb downstream 10.0kb downstream 14291 true scaffold_3: 12427818-12442108 Setaria italica
Seita.3G168800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12432109-12442108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177860 5267 Panicoideae View MSA
124588139 5269 Grass View MSA
122046963 5273 Angiosperm View MSA
121345198 5274 Embryophyte View MSA
123423955 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.335     High High
cufflinks 28.637     High High
cufflinks 17.974     High  
cufflinks 14.778     High Low
cufflinks 12.578     High Low
cufflinks 27.968     High High
cufflinks 19.595     High  
cufflinks 16.024     High  
cufflinks 12.352       Low
cufflinks 18.016     High  
cufflinks 21.24     High  
cufflinks 23.359     High  
cufflinks 24.684     High  
cufflinks 18.854     High  
cufflinks 27.323     High High
cufflinks 20.9     High  
cufflinks 24.538     High  
cufflinks 24.641     High  
cufflinks 20.178     High  
cufflinks 21.273     High  

0 Strain