Gene : Seita.3G166900 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1669
Name:  ? Seita.3G166900 Secondary Identifier:  ? PAC:32709802
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G166900 0.5kb upstream 0.5kb upstream 2411 true scaffold_3: 12272924-12275334 Setaria italica
Seita.3G166900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12272924-12273423 Setaria italica
Seita.3G166900 0.5kb downstream 0.5kb downstream 2411 true scaffold_3: 12273424-12275834 Setaria italica
Seita.3G166900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12275335-12275834 Setaria italica
Seita.3G166900 1.0kb upstream 1.0kb upstream 2911 true scaffold_3: 12272424-12275334 Setaria italica
Seita.3G166900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12272424-12273423 Setaria italica
Seita.3G166900 1.0kb downstream 1.0kb downstream 2911 true scaffold_3: 12273424-12276334 Setaria italica
Seita.3G166900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12275335-12276334 Setaria italica
Seita.3G166900 2.0kb upstream 2.0kb upstream 3911 true scaffold_3: 12271424-12275334 Setaria italica
Seita.3G166900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12271424-12273423 Setaria italica
Seita.3G166900 2.0kb downstream 2.0kb downstream 3911 true scaffold_3: 12273424-12277334 Setaria italica
Seita.3G166900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12275335-12277334 Setaria italica
Seita.3G166900 5.0kb upstream 5.0kb upstream 6911 true scaffold_3: 12268424-12275334 Setaria italica
Seita.3G166900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12268424-12273423 Setaria italica
Seita.3G166900 5.0kb downstream 5.0kb downstream 6911 true scaffold_3: 12273424-12280334 Setaria italica
Seita.3G166900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12275335-12280334 Setaria italica
Seita.3G166900 10.0kb upstream 10.0kb upstream 11911 true scaffold_3: 12263424-12275334 Setaria italica
Seita.3G166900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12263424-12273423 Setaria italica
Seita.3G166900 10.0kb downstream 10.0kb downstream 11911 true scaffold_3: 12273424-12285334 Setaria italica
Seita.3G166900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12275335-12285334 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182768 5267 Panicoideae View MSA
124587495 5269 Grass View MSA
122041559 5273 Angiosperm View MSA
121309863 5274 Embryophyte View MSA
123347506 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.258        
cufflinks 5.711        
cufflinks 7.266        
cufflinks 4.975        
cufflinks 5.356        
cufflinks 6.601        
cufflinks 5.309        
cufflinks 4.28       Low
cufflinks 4.109       Low
cufflinks 3.83       Low
cufflinks 5.344        
cufflinks 7.425       High
cufflinks 3.493       Low
cufflinks 8.087       High
cufflinks 6.842        
cufflinks 4.676        
cufflinks 8.378       High
cufflinks 7.036        
cufflinks 6.847        
cufflinks 6.82        

0 Strain