Gene : Seita.3G167400 S. italica v2.2
Defline:  (1 of 2) PTHR23416//PTHR23416:SF67 - SIALIC ACID SYNTHASE-RELATED Genomic Order:  1674
Name:  ? Seita.3G167400 Secondary Identifier:  ? PAC:32714164
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CYSTSYN-PWY Setaria italica pathologic  
Sitalica PWY-6936 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G167400 0.5kb upstream 0.5kb upstream 3813 true scaffold_3: 12299450-12303262 Setaria italica
Seita.3G167400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12299450-12299949 Setaria italica
Seita.3G167400 0.5kb downstream 0.5kb downstream 3813 true scaffold_3: 12299950-12303762 Setaria italica
Seita.3G167400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12303263-12303762 Setaria italica
Seita.3G167400 1.0kb upstream 1.0kb upstream 4313 true scaffold_3: 12298950-12303262 Setaria italica
Seita.3G167400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12298950-12299949 Setaria italica
Seita.3G167400 1.0kb downstream 1.0kb downstream 4313 true scaffold_3: 12299950-12304262 Setaria italica
Seita.3G167400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12303263-12304262 Setaria italica
Seita.3G167400 2.0kb upstream 2.0kb upstream 5313 true scaffold_3: 12297950-12303262 Setaria italica
Seita.3G167400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12297950-12299949 Setaria italica
Seita.3G167400 2.0kb downstream 2.0kb downstream 5313 true scaffold_3: 12299950-12305262 Setaria italica
Seita.3G167400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12303263-12305262 Setaria italica
Seita.3G167400 5.0kb upstream 5.0kb upstream 8313 true scaffold_3: 12294950-12303262 Setaria italica
Seita.3G167400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12294950-12299949 Setaria italica
Seita.3G167400 5.0kb downstream 5.0kb downstream 8313 true scaffold_3: 12299950-12308262 Setaria italica
Seita.3G167400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12303263-12308262 Setaria italica
Seita.3G167400 10.0kb upstream 10.0kb upstream 13313 true scaffold_3: 12289950-12303262 Setaria italica
Seita.3G167400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12289950-12299949 Setaria italica
Seita.3G167400 10.0kb downstream 10.0kb downstream 13313 true scaffold_3: 12299950-12313262 Setaria italica
Seita.3G167400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12303263-12313262 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177076 5267 Panicoideae View MSA
124579116 5269 Grass View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.686        
cufflinks 1.931       Low
cufflinks 3.068        
cufflinks 2.514        
cufflinks 2.542        
cufflinks 2.165       Low
cufflinks 2.308       Low
cufflinks 3.567        
cufflinks 2.296       Low
cufflinks 5.778       High
cufflinks 2.877        
cufflinks 3.767        
cufflinks 3.938        
cufflinks 3.803        
cufflinks 2.548        
cufflinks 2.328       Low
cufflinks 5.012       High
cufflinks 3.535        
cufflinks 4.072        
cufflinks 4.38       High

0 Strain