Gene : Seita.3G167300 S. italica v2.2
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  1673
Name:  ? Seita.3G167300 Secondary Identifier:  ? PAC:32713203
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYCOGENSYNTH-PWY Setaria italica pathologic  
Sitalica PWY-622 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G167300 0.5kb upstream 0.5kb upstream 7007 true scaffold_3: 12286638-12293644 Setaria italica
Seita.3G167300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12293145-12293644 Setaria italica
Seita.3G167300 0.5kb downstream 0.5kb downstream 7007 true scaffold_3: 12286138-12293144 Setaria italica
Seita.3G167300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12286138-12286637 Setaria italica
Seita.3G167300 1.0kb upstream 1.0kb upstream 7507 true scaffold_3: 12286638-12294144 Setaria italica
Seita.3G167300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12293145-12294144 Setaria italica
Seita.3G167300 1.0kb downstream 1.0kb downstream 7507 true scaffold_3: 12285638-12293144 Setaria italica
Seita.3G167300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12285638-12286637 Setaria italica
Seita.3G167300 2.0kb upstream 2.0kb upstream 8507 true scaffold_3: 12286638-12295144 Setaria italica
Seita.3G167300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12293145-12295144 Setaria italica
Seita.3G167300 2.0kb downstream 2.0kb downstream 8507 true scaffold_3: 12284638-12293144 Setaria italica
Seita.3G167300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12284638-12286637 Setaria italica
Seita.3G167300 5.0kb upstream 5.0kb upstream 11507 true scaffold_3: 12286638-12298144 Setaria italica
Seita.3G167300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12293145-12298144 Setaria italica
Seita.3G167300 5.0kb downstream 5.0kb downstream 11507 true scaffold_3: 12281638-12293144 Setaria italica
Seita.3G167300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12281638-12286637 Setaria italica
Seita.3G167300 10.0kb upstream 10.0kb upstream 16507 true scaffold_3: 12286638-12303144 Setaria italica
Seita.3G167300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12293145-12303144 Setaria italica
Seita.3G167300 10.0kb downstream 10.0kb downstream 16507 true scaffold_3: 12276638-12293144 Setaria italica
Seita.3G167300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12276638-12286637 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189391 5267 Panicoideae View MSA
124578861 5269 Grass View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.237     High  
cufflinks 7.69        
cufflinks 18.245     High  
cufflinks 15.392     High  
cufflinks 21.063     High High
cufflinks 7.841        
cufflinks 19.111     High  
cufflinks 13.536     High  
cufflinks 25.451     High High
cufflinks 4.778        
cufflinks 10.64        
cufflinks 2.236       Low
cufflinks 2.867       Low
cufflinks 12.668        
cufflinks 3.026       Low
cufflinks 28.572     High High
cufflinks 3.055       Low
cufflinks 15.605     High  
cufflinks 9.917        
cufflinks 2.147       Low

0 Strain