Gene : Seita.3G171800 S. italica v2.2
Defline:  (1 of 41) PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Genomic Order:  1718
Name:  ? Seita.3G171800 Secondary Identifier:  ? PAC:32710732
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G171800 0.5kb upstream 0.5kb upstream 1861 true scaffold_3: 12718045-12719905 Setaria italica
Seita.3G171800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12718045-12718544 Setaria italica
Seita.3G171800 0.5kb downstream 0.5kb downstream 1861 true scaffold_3: 12718545-12720405 Setaria italica
Seita.3G171800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12719906-12720405 Setaria italica
Seita.3G171800 1.0kb upstream 1.0kb upstream 2361 true scaffold_3: 12717545-12719905 Setaria italica
Seita.3G171800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12717545-12718544 Setaria italica
Seita.3G171800 1.0kb downstream 1.0kb downstream 2361 true scaffold_3: 12718545-12720905 Setaria italica
Seita.3G171800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12719906-12720905 Setaria italica
Seita.3G171800 2.0kb upstream 2.0kb upstream 3361 true scaffold_3: 12716545-12719905 Setaria italica
Seita.3G171800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12716545-12718544 Setaria italica
Seita.3G171800 2.0kb downstream 2.0kb downstream 3361 true scaffold_3: 12718545-12721905 Setaria italica
Seita.3G171800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12719906-12721905 Setaria italica
Seita.3G171800 5.0kb upstream 5.0kb upstream 6361 true scaffold_3: 12713545-12719905 Setaria italica
Seita.3G171800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12713545-12718544 Setaria italica
Seita.3G171800 5.0kb downstream 5.0kb downstream 6361 true scaffold_3: 12718545-12724905 Setaria italica
Seita.3G171800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12719906-12724905 Setaria italica
Seita.3G171800 10.0kb upstream 10.0kb upstream 11361 true scaffold_3: 12708545-12719905 Setaria italica
Seita.3G171800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12708545-12718544 Setaria italica
Seita.3G171800 10.0kb downstream 10.0kb downstream 11361 true scaffold_3: 12718545-12729905 Setaria italica
Seita.3G171800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12719906-12729905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186942 5267 Panicoideae View MSA
124573693 5269 Grass View MSA
122048745 5273 Angiosperm View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.415        
cufflinks 0.047     Low  
cufflinks 0.027     Low Low
cufflinks 0.206        
cufflinks 0.193        
cufflinks 0.159        
cufflinks 0.012     Low Low
cufflinks 0.114     Low  
cufflinks 0.123        
cufflinks 0.634        
cufflinks 0.122     Low  
cufflinks 9.278       High
cufflinks 0.465        
cufflinks 0.022     Low Low
cufflinks 0.335        
cufflinks 0.101     Low  
cufflinks 1.423       High
cufflinks 2.259       High
cufflinks 0.042     Low  
cufflinks 0.1     Low  

0 Strain