Gene : Seita.3G170600 S. italica v2.2
Defline:  (1 of 2) PTHR11972//PTHR11972:SF66 - NADPH OXIDASE Genomic Order:  1706
Name:  ? Seita.3G170600 Secondary Identifier:  ? PAC:32711975
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G170600 0.5kb upstream 0.5kb upstream 9973 true scaffold_3: 12599977-12609949 Setaria italica
Seita.3G170600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12599977-12600476 Setaria italica
Seita.3G170600 0.5kb downstream 0.5kb downstream 9973 true scaffold_3: 12600477-12610449 Setaria italica
Seita.3G170600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12609950-12610449 Setaria italica
Seita.3G170600 1.0kb upstream 1.0kb upstream 10473 true scaffold_3: 12599477-12609949 Setaria italica
Seita.3G170600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12599477-12600476 Setaria italica
Seita.3G170600 1.0kb downstream 1.0kb downstream 10473 true scaffold_3: 12600477-12610949 Setaria italica
Seita.3G170600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12609950-12610949 Setaria italica
Seita.3G170600 2.0kb upstream 2.0kb upstream 11473 true scaffold_3: 12598477-12609949 Setaria italica
Seita.3G170600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12598477-12600476 Setaria italica
Seita.3G170600 2.0kb downstream 2.0kb downstream 11473 true scaffold_3: 12600477-12611949 Setaria italica
Seita.3G170600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12609950-12611949 Setaria italica
Seita.3G170600 5.0kb upstream 5.0kb upstream 14473 true scaffold_3: 12595477-12609949 Setaria italica
Seita.3G170600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12595477-12600476 Setaria italica
Seita.3G170600 5.0kb downstream 5.0kb downstream 14473 true scaffold_3: 12600477-12614949 Setaria italica
Seita.3G170600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12609950-12614949 Setaria italica
Seita.3G170600 10.0kb upstream 10.0kb upstream 19473 true scaffold_3: 12590477-12609949 Setaria italica
Seita.3G170600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12590477-12600476 Setaria italica
Seita.3G170600 10.0kb downstream 10.0kb downstream 19473 true scaffold_3: 12600477-12619949 Setaria italica
Seita.3G170600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12609950-12619949 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180264 5267 Panicoideae View MSA
124574970 5269 Grass View MSA
122049816 5273 Angiosperm View MSA
121350202 5274 Embryophyte View MSA
123427915 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.467     High  
cufflinks 18.647     High High
cufflinks 1.556       Low
cufflinks 0.909       Low
cufflinks 1.701       Low
cufflinks 18.585     High High
cufflinks 10.893        
cufflinks 5.239        
cufflinks 6.852        
cufflinks 8.642        
cufflinks 15.642     High  
cufflinks 9.442        
cufflinks 14.727     High  
cufflinks 4.319        
cufflinks 18.911     High High
cufflinks 5.405        
cufflinks 12.482        
cufflinks 3.936        
cufflinks 2.242       Low
cufflinks 15.569     High  

0 Strain