Gene : Seita.3G097700 S. italica v2.2
Defline:  (1 of 2) PTHR11669//PTHR11669:SF12 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT Genomic Order:  977
Name:  ? Seita.3G097700 Secondary Identifier:  ? PAC:32712985
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G097700 0.5kb upstream 0.5kb upstream 9061 true scaffold_3: 6357715-6366775 Setaria italica
Seita.3G097700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6357715-6358214 Setaria italica
Seita.3G097700 0.5kb downstream 0.5kb downstream 9061 true scaffold_3: 6358215-6367275 Setaria italica
Seita.3G097700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6366776-6367275 Setaria italica
Seita.3G097700 1.0kb upstream 1.0kb upstream 9561 true scaffold_3: 6357215-6366775 Setaria italica
Seita.3G097700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6357215-6358214 Setaria italica
Seita.3G097700 1.0kb downstream 1.0kb downstream 9561 true scaffold_3: 6358215-6367775 Setaria italica
Seita.3G097700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6366776-6367775 Setaria italica
Seita.3G097700 2.0kb upstream 2.0kb upstream 10561 true scaffold_3: 6356215-6366775 Setaria italica
Seita.3G097700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6356215-6358214 Setaria italica
Seita.3G097700 2.0kb downstream 2.0kb downstream 10561 true scaffold_3: 6358215-6368775 Setaria italica
Seita.3G097700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6366776-6368775 Setaria italica
Seita.3G097700 5.0kb upstream 5.0kb upstream 13561 true scaffold_3: 6353215-6366775 Setaria italica
Seita.3G097700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6353215-6358214 Setaria italica
Seita.3G097700 5.0kb downstream 5.0kb downstream 13561 true scaffold_3: 6358215-6371775 Setaria italica
Seita.3G097700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6366776-6371775 Setaria italica
Seita.3G097700 10.0kb upstream 10.0kb upstream 18561 true scaffold_3: 6348215-6366775 Setaria italica
Seita.3G097700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6348215-6358214 Setaria italica
Seita.3G097700 10.0kb downstream 10.0kb downstream 18561 true scaffold_3: 6358215-6376775 Setaria italica
Seita.3G097700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6366776-6376775 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186337 5267 Panicoideae View MSA
124569050 5269 Grass View MSA
122045502 5273 Angiosperm View MSA
121349902 5274 Embryophyte View MSA
123381492 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.346        
cufflinks 0.423       High
cufflinks 0.038     Low Low
cufflinks 0.049     Low Low
cufflinks 0.078     Low  
cufflinks 0.335        
cufflinks 0.268        
cufflinks 0.215        
cufflinks 0.159        
cufflinks 0.179     Low  
cufflinks 0.338        
cufflinks 0.169        
cufflinks 0.163     Low  
cufflinks 0.014     Low Low
cufflinks 0.353        
cufflinks 0.185        
cufflinks 0.253        
cufflinks 0.073     Low  
cufflinks 0.027     Low Low
cufflinks 0.344        

0 Strain