Gene : Seita.3G098400 S. italica v2.2
Defline:  (1 of 1) PTHR11945//PTHR11945:SF205 - MADS BOX PROTEIN Genomic Order:  984
Name:  ? Seita.3G098400 Secondary Identifier:  ? PAC:32713479
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G098400 0.5kb upstream 0.5kb upstream 5499 true scaffold_3: 6410507-6416005 Setaria italica
Seita.3G098400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6415506-6416005 Setaria italica
Seita.3G098400 0.5kb downstream 0.5kb downstream 5499 true scaffold_3: 6410007-6415505 Setaria italica
Seita.3G098400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6410007-6410506 Setaria italica
Seita.3G098400 1.0kb upstream 1.0kb upstream 5999 true scaffold_3: 6410507-6416505 Setaria italica
Seita.3G098400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6415506-6416505 Setaria italica
Seita.3G098400 1.0kb downstream 1.0kb downstream 5999 true scaffold_3: 6409507-6415505 Setaria italica
Seita.3G098400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6409507-6410506 Setaria italica
Seita.3G098400 2.0kb upstream 2.0kb upstream 6999 true scaffold_3: 6410507-6417505 Setaria italica
Seita.3G098400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6415506-6417505 Setaria italica
Seita.3G098400 2.0kb downstream 2.0kb downstream 6999 true scaffold_3: 6408507-6415505 Setaria italica
Seita.3G098400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6408507-6410506 Setaria italica
Seita.3G098400 5.0kb upstream 5.0kb upstream 9999 true scaffold_3: 6410507-6420505 Setaria italica
Seita.3G098400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6415506-6420505 Setaria italica
Seita.3G098400 5.0kb downstream 5.0kb downstream 9999 true scaffold_3: 6405507-6415505 Setaria italica
Seita.3G098400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6405507-6410506 Setaria italica
Seita.3G098400 10.0kb upstream 10.0kb upstream 14999 true scaffold_3: 6410507-6425505 Setaria italica
Seita.3G098400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6415506-6425505 Setaria italica
Seita.3G098400 10.0kb downstream 10.0kb downstream 14999 true scaffold_3: 6400507-6415505 Setaria italica
Seita.3G098400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6400507-6410506 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188595 5267 Panicoideae View MSA
124586411 5269 Grass View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low  
cufflinks 2.455       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.365       High
cufflinks 0.002     Low  
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.013     Low  
cufflinks 0.004     Low  

0 Strain