Gene : Seita.3G103000 S. italica v2.2
Defline:  (1 of 1) PTHR28106:SF1 - MITOCHONDRIAL ATPASE COMPLEX SUBUNIT ATP10 Genomic Order:  1030
Name:  ? Seita.3G103000 Secondary Identifier:  ? PAC:32714111
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G103000 0.5kb upstream 0.5kb upstream 4055 true scaffold_3: 6746571-6750625 Setaria italica
Seita.3G103000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6750126-6750625 Setaria italica
Seita.3G103000 0.5kb downstream 0.5kb downstream 4055 true scaffold_3: 6746071-6750125 Setaria italica
Seita.3G103000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6746071-6746570 Setaria italica
Seita.3G103000 1.0kb upstream 1.0kb upstream 4555 true scaffold_3: 6746571-6751125 Setaria italica
Seita.3G103000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6750126-6751125 Setaria italica
Seita.3G103000 1.0kb downstream 1.0kb downstream 4555 true scaffold_3: 6745571-6750125 Setaria italica
Seita.3G103000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6745571-6746570 Setaria italica
Seita.3G103000 2.0kb upstream 2.0kb upstream 5555 true scaffold_3: 6746571-6752125 Setaria italica
Seita.3G103000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6750126-6752125 Setaria italica
Seita.3G103000 2.0kb downstream 2.0kb downstream 5555 true scaffold_3: 6744571-6750125 Setaria italica
Seita.3G103000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6744571-6746570 Setaria italica
Seita.3G103000 5.0kb upstream 5.0kb upstream 8555 true scaffold_3: 6746571-6755125 Setaria italica
Seita.3G103000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6750126-6755125 Setaria italica
Seita.3G103000 5.0kb downstream 5.0kb downstream 8555 true scaffold_3: 6741571-6750125 Setaria italica
Seita.3G103000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6741571-6746570 Setaria italica
Seita.3G103000 10.0kb upstream 10.0kb upstream 13555 true scaffold_3: 6746571-6760125 Setaria italica
Seita.3G103000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6750126-6760125 Setaria italica
Seita.3G103000 10.0kb downstream 10.0kb downstream 13555 true scaffold_3: 6736571-6750125 Setaria italica
Seita.3G103000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6736571-6746570 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182694 5267 Panicoideae View MSA
124570404 5269 Grass View MSA
122045687 5273 Angiosperm View MSA
121346951 5274 Embryophyte View MSA
123424786 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.828        
cufflinks 2.33        
cufflinks 0.54       Low
cufflinks 0.463       Low
cufflinks 0.681       Low
cufflinks 2.183        
cufflinks 0.857        
cufflinks 1.909        
cufflinks 1.421        
cufflinks 3.132       High
cufflinks 1.641        
cufflinks 2.071        
cufflinks 2.036        
cufflinks 0.791        
cufflinks 1.818        
cufflinks 0.81        
cufflinks 2.931       High
cufflinks 0.784        
cufflinks 0.654       Low
cufflinks 2.526       High

0 Strain