Gene : Seita.3G103600 S. italica v2.2
Defline:  (1 of 1) PTHR32370:SF16 - NON-PHOTOTROPIC HYPOCOTYL-LIKE PROTEIN Genomic Order:  1036
Name:  ? Seita.3G103600 Secondary Identifier:  ? PAC:32711911
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G103600 0.5kb upstream 0.5kb upstream 4671 true scaffold_3: 6785489-6790159 Setaria italica
Seita.3G103600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6785489-6785988 Setaria italica
Seita.3G103600 0.5kb downstream 0.5kb downstream 4671 true scaffold_3: 6785989-6790659 Setaria italica
Seita.3G103600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6790160-6790659 Setaria italica
Seita.3G103600 1.0kb upstream 1.0kb upstream 5171 true scaffold_3: 6784989-6790159 Setaria italica
Seita.3G103600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6784989-6785988 Setaria italica
Seita.3G103600 1.0kb downstream 1.0kb downstream 5171 true scaffold_3: 6785989-6791159 Setaria italica
Seita.3G103600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6790160-6791159 Setaria italica
Seita.3G103600 2.0kb upstream 2.0kb upstream 6171 true scaffold_3: 6783989-6790159 Setaria italica
Seita.3G103600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6783989-6785988 Setaria italica
Seita.3G103600 2.0kb downstream 2.0kb downstream 6171 true scaffold_3: 6785989-6792159 Setaria italica
Seita.3G103600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6790160-6792159 Setaria italica
Seita.3G103600 5.0kb upstream 5.0kb upstream 9171 true scaffold_3: 6780989-6790159 Setaria italica
Seita.3G103600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6780989-6785988 Setaria italica
Seita.3G103600 5.0kb downstream 5.0kb downstream 9171 true scaffold_3: 6785989-6795159 Setaria italica
Seita.3G103600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6790160-6795159 Setaria italica
Seita.3G103600 10.0kb upstream 10.0kb upstream 14171 true scaffold_3: 6775989-6790159 Setaria italica
Seita.3G103600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6775989-6785988 Setaria italica
Seita.3G103600 10.0kb downstream 10.0kb downstream 14171 true scaffold_3: 6785989-6800159 Setaria italica
Seita.3G103600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6790160-6800159 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176397 5267 Panicoideae View MSA
124588903 5269 Grass View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.003     Low Low
cufflinks 0.472       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.509       High
cufflinks 0.018     Low  
cufflinks 0.02     Low  
cufflinks 0.005     Low  
cufflinks 0.221     Low High
cufflinks 0.005     Low  
cufflinks 0.028     Low  
cufflinks 0.04     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.049     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  

0 Strain