Gene : Seita.3G102300 S. italica v2.2
Defline:  (1 of 14) KOG0752 - Mitochondrial solute carrier protein Genomic Order:  1023
Name:  ? Seita.3G102300 Secondary Identifier:  ? PAC:32714675
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G102300 0.5kb upstream 0.5kb upstream 4214 true scaffold_3: 6704031-6708244 Setaria italica
Seita.3G102300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6704031-6704530 Setaria italica
Seita.3G102300 0.5kb downstream 0.5kb downstream 4214 true scaffold_3: 6704531-6708744 Setaria italica
Seita.3G102300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6708245-6708744 Setaria italica
Seita.3G102300 1.0kb upstream 1.0kb upstream 4714 true scaffold_3: 6703531-6708244 Setaria italica
Seita.3G102300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6703531-6704530 Setaria italica
Seita.3G102300 1.0kb downstream 1.0kb downstream 4714 true scaffold_3: 6704531-6709244 Setaria italica
Seita.3G102300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6708245-6709244 Setaria italica
Seita.3G102300 2.0kb upstream 2.0kb upstream 5714 true scaffold_3: 6702531-6708244 Setaria italica
Seita.3G102300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6702531-6704530 Setaria italica
Seita.3G102300 2.0kb downstream 2.0kb downstream 5714 true scaffold_3: 6704531-6710244 Setaria italica
Seita.3G102300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6708245-6710244 Setaria italica
Seita.3G102300 5.0kb upstream 5.0kb upstream 8714 true scaffold_3: 6699531-6708244 Setaria italica
Seita.3G102300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6699531-6704530 Setaria italica
Seita.3G102300 5.0kb downstream 5.0kb downstream 8714 true scaffold_3: 6704531-6713244 Setaria italica
Seita.3G102300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6708245-6713244 Setaria italica
Seita.3G102300 10.0kb upstream 10.0kb upstream 13714 true scaffold_3: 6694531-6708244 Setaria italica
Seita.3G102300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6694531-6704530 Setaria italica
Seita.3G102300 10.0kb downstream 10.0kb downstream 13714 true scaffold_3: 6704531-6718244 Setaria italica
Seita.3G102300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6708245-6718244 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183285 5267 Panicoideae View MSA
124571421 5269 Grass View MSA
122044807 5273 Angiosperm View MSA
123429077 5275 Viridiplantae View MSA
121350048 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.993       High
cufflinks 5.694        
cufflinks 4.564       Low
cufflinks 4.423       Low
cufflinks 4.748       Low
cufflinks 5.829        
cufflinks 7.581        
cufflinks 6.832        
cufflinks 7.668        
cufflinks 4.5       Low
cufflinks 6.076        
cufflinks 7.14        
cufflinks 4.146       Low
cufflinks 6.232        
cufflinks 7.427        
cufflinks 6.516        
cufflinks 7.33        
cufflinks 6.794        
cufflinks 8.269       High
cufflinks 6.428        

0 Strain