Gene : Seita.3G105900 S. italica v2.2
Genomic Order:  1059 Name:  ? Seita.3G105900
Secondary Identifier:  ? PAC:32712662
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G105900 0.5kb upstream 0.5kb upstream 2556 true scaffold_3: 6983914-6986469 Setaria italica
Seita.3G105900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6983914-6984413 Setaria italica
Seita.3G105900 0.5kb downstream 0.5kb downstream 2556 true scaffold_3: 6984414-6986969 Setaria italica
Seita.3G105900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6986470-6986969 Setaria italica
Seita.3G105900 1.0kb upstream 1.0kb upstream 3056 true scaffold_3: 6983414-6986469 Setaria italica
Seita.3G105900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6983414-6984413 Setaria italica
Seita.3G105900 1.0kb downstream 1.0kb downstream 3056 true scaffold_3: 6984414-6987469 Setaria italica
Seita.3G105900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6986470-6987469 Setaria italica
Seita.3G105900 2.0kb upstream 2.0kb upstream 4056 true scaffold_3: 6982414-6986469 Setaria italica
Seita.3G105900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6982414-6984413 Setaria italica
Seita.3G105900 2.0kb downstream 2.0kb downstream 4056 true scaffold_3: 6984414-6988469 Setaria italica
Seita.3G105900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6986470-6988469 Setaria italica
Seita.3G105900 5.0kb upstream 5.0kb upstream 7056 true scaffold_3: 6979414-6986469 Setaria italica
Seita.3G105900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6979414-6984413 Setaria italica
Seita.3G105900 5.0kb downstream 5.0kb downstream 7056 true scaffold_3: 6984414-6991469 Setaria italica
Seita.3G105900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6986470-6991469 Setaria italica
Seita.3G105900 10.0kb upstream 10.0kb upstream 12056 true scaffold_3: 6974414-6986469 Setaria italica
Seita.3G105900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6974414-6984413 Setaria italica
Seita.3G105900 10.0kb downstream 10.0kb downstream 12056 true scaffold_3: 6984414-6996469 Setaria italica
Seita.3G105900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6986470-6996469 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198230 5267 Panicoideae View MSA
124576035 5269 Grass View MSA
122044068 5273 Angiosperm View MSA
121310233 5274 Embryophyte View MSA
123347779 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.054     Low  
cufflinks 0.374       High
cufflinks 0.045     Low  
cufflinks 0.111        
cufflinks 0.065     Low  
cufflinks 0.405       High
cufflinks 0.057     Low  
cufflinks 0.11     Low  
cufflinks 0.04     Low  
cufflinks 0.094     Low  
cufflinks 0.03     Low Low
cufflinks 0.056     Low  
cufflinks 0.033     Low Low
cufflinks 0.198       High
cufflinks 0.065     Low  
cufflinks 0.061     Low  
cufflinks 0.034     Low Low
cufflinks 0.072     Low  
cufflinks 0.198       High
cufflinks 0.05     Low  

0 Strain