Gene : Seita.3G108000 S. italica v2.2
Defline:  (1 of 3) PTHR13711//PTHR13711:SF199 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN Genomic Order:  1080
Name:  ? Seita.3G108000 Secondary Identifier:  ? PAC:32712915
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G108000 0.5kb upstream 0.5kb upstream 5816 true scaffold_3: 7181615-7187430 Setaria italica
Seita.3G108000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7181615-7182114 Setaria italica
Seita.3G108000 0.5kb downstream 0.5kb downstream 5816 true scaffold_3: 7182115-7187930 Setaria italica
Seita.3G108000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7187431-7187930 Setaria italica
Seita.3G108000 1.0kb upstream 1.0kb upstream 6316 true scaffold_3: 7181115-7187430 Setaria italica
Seita.3G108000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7181115-7182114 Setaria italica
Seita.3G108000 1.0kb downstream 1.0kb downstream 6316 true scaffold_3: 7182115-7188430 Setaria italica
Seita.3G108000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7187431-7188430 Setaria italica
Seita.3G108000 2.0kb upstream 2.0kb upstream 7316 true scaffold_3: 7180115-7187430 Setaria italica
Seita.3G108000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7180115-7182114 Setaria italica
Seita.3G108000 2.0kb downstream 2.0kb downstream 7316 true scaffold_3: 7182115-7189430 Setaria italica
Seita.3G108000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7187431-7189430 Setaria italica
Seita.3G108000 5.0kb upstream 5.0kb upstream 10316 true scaffold_3: 7177115-7187430 Setaria italica
Seita.3G108000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7177115-7182114 Setaria italica
Seita.3G108000 5.0kb downstream 5.0kb downstream 10316 true scaffold_3: 7182115-7192430 Setaria italica
Seita.3G108000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7187431-7192430 Setaria italica
Seita.3G108000 10.0kb upstream 10.0kb upstream 15316 true scaffold_3: 7172115-7187430 Setaria italica
Seita.3G108000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7172115-7182114 Setaria italica
Seita.3G108000 10.0kb downstream 10.0kb downstream 15316 true scaffold_3: 7182115-7197430 Setaria italica
Seita.3G108000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7187431-7197430 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183191 5267 Panicoideae View MSA
124586936 5269 Grass View MSA
122041570 5273 Angiosperm View MSA
121347609 5274 Embryophyte View MSA
123424150 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.006     Low Low
cufflinks 0.352       High
cufflinks 0.063     Low  
cufflinks 0.039     Low  
cufflinks 0.044     Low  
cufflinks 0.502       High
cufflinks 0.014     Low Low
cufflinks 0.025     Low  
cufflinks 0.036     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.025     Low  
cufflinks 0.088     Low  
cufflinks 0.034     Low  
cufflinks 0.056     Low  
cufflinks 0.008     Low Low
cufflinks 0.043     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.068     Low  

0 Strain