Gene : Seita.3G111100 S. italica v2.2
Defline:  (1 of 1) PTHR11735:SF14 - TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED Genomic Order:  1111
Name:  ? Seita.3G111100 Secondary Identifier:  ? PAC:32713997
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1587 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G111100 0.5kb upstream 0.5kb upstream 4324 true scaffold_3: 7405419-7409742 Setaria italica
Seita.3G111100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7409243-7409742 Setaria italica
Seita.3G111100 0.5kb downstream 0.5kb downstream 4324 true scaffold_3: 7404919-7409242 Setaria italica
Seita.3G111100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7404919-7405418 Setaria italica
Seita.3G111100 1.0kb upstream 1.0kb upstream 4824 true scaffold_3: 7405419-7410242 Setaria italica
Seita.3G111100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7409243-7410242 Setaria italica
Seita.3G111100 1.0kb downstream 1.0kb downstream 4824 true scaffold_3: 7404419-7409242 Setaria italica
Seita.3G111100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7404419-7405418 Setaria italica
Seita.3G111100 2.0kb upstream 2.0kb upstream 5824 true scaffold_3: 7405419-7411242 Setaria italica
Seita.3G111100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7409243-7411242 Setaria italica
Seita.3G111100 2.0kb downstream 2.0kb downstream 5824 true scaffold_3: 7403419-7409242 Setaria italica
Seita.3G111100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7403419-7405418 Setaria italica
Seita.3G111100 5.0kb upstream 5.0kb upstream 8824 true scaffold_3: 7405419-7414242 Setaria italica
Seita.3G111100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7409243-7414242 Setaria italica
Seita.3G111100 5.0kb downstream 5.0kb downstream 8824 true scaffold_3: 7400419-7409242 Setaria italica
Seita.3G111100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7400419-7405418 Setaria italica
Seita.3G111100 10.0kb upstream 10.0kb upstream 13824 true scaffold_3: 7405419-7419242 Setaria italica
Seita.3G111100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7409243-7419242 Setaria italica
Seita.3G111100 10.0kb downstream 10.0kb downstream 13824 true scaffold_3: 7395419-7409242 Setaria italica
Seita.3G111100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7395419-7405418 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190986 5267 Panicoideae View MSA
124579950 5269 Grass View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.429        
cufflinks 6.022        
cufflinks 6.235       High
cufflinks 3.637       Low
cufflinks 4.31        
cufflinks 6.326       High
cufflinks 3.731        
cufflinks 4.52        
cufflinks 6.102        
cufflinks 3.565       Low
cufflinks 4.664        
cufflinks 4.402        
cufflinks 3.801        
cufflinks 8.66       High
cufflinks 5.61        
cufflinks 2.965       Low
cufflinks 6.309       High
cufflinks 4.424        
cufflinks 3.913        
cufflinks 5.039        

0 Strain