Gene : Seita.3G109500 S. italica v2.2
Defline:  (1 of 3) PTHR11599:SF44 - AT05866P-RELATED Genomic Order:  1095
Name:  ? Seita.3G109500 Secondary Identifier:  ? PAC:32714338
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G109500 0.5kb upstream 0.5kb upstream 3645 true scaffold_3: 7297829-7301473 Setaria italica
Seita.3G109500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7297829-7298328 Setaria italica
Seita.3G109500 0.5kb downstream 0.5kb downstream 3645 true scaffold_3: 7298329-7301973 Setaria italica
Seita.3G109500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7301474-7301973 Setaria italica
Seita.3G109500 1.0kb upstream 1.0kb upstream 4145 true scaffold_3: 7297329-7301473 Setaria italica
Seita.3G109500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7297329-7298328 Setaria italica
Seita.3G109500 1.0kb downstream 1.0kb downstream 4145 true scaffold_3: 7298329-7302473 Setaria italica
Seita.3G109500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7301474-7302473 Setaria italica
Seita.3G109500 2.0kb upstream 2.0kb upstream 5145 true scaffold_3: 7296329-7301473 Setaria italica
Seita.3G109500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7296329-7298328 Setaria italica
Seita.3G109500 2.0kb downstream 2.0kb downstream 5145 true scaffold_3: 7298329-7303473 Setaria italica
Seita.3G109500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7301474-7303473 Setaria italica
Seita.3G109500 5.0kb upstream 5.0kb upstream 8145 true scaffold_3: 7293329-7301473 Setaria italica
Seita.3G109500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7293329-7298328 Setaria italica
Seita.3G109500 5.0kb downstream 5.0kb downstream 8145 true scaffold_3: 7298329-7306473 Setaria italica
Seita.3G109500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7301474-7306473 Setaria italica
Seita.3G109500 10.0kb upstream 10.0kb upstream 13145 true scaffold_3: 7288329-7301473 Setaria italica
Seita.3G109500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7288329-7298328 Setaria italica
Seita.3G109500 10.0kb downstream 10.0kb downstream 13145 true scaffold_3: 7298329-7311473 Setaria italica
Seita.3G109500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7301474-7311473 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122053485 5267 Panicoideae Singleton cluster - no MSA
124353357 5269 Grass Singleton cluster - no MSA
122044659 5273 Angiosperm View MSA
121345810 5274 Embryophyte View MSA
123428515 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.73        
cufflinks 15.953     High  
cufflinks 10.108        
cufflinks 9.921        
cufflinks 7.786       Low
cufflinks 16.321     High  
cufflinks 10.474        
cufflinks 14.838     High  
cufflinks 10.378        
cufflinks 8.507       Low
cufflinks 10.93        
cufflinks 21.486     High High
cufflinks 15.672     High  
cufflinks 13.519        
cufflinks 21.257     High High
cufflinks 5.715       Low
cufflinks 22.141     High High
cufflinks 9.945        
cufflinks 10.069        
cufflinks 21.07     High High

0 Strain