Gene : Seita.3G119100 S. italica v2.2
Defline:  (1 of 1) PTHR11349:SF53 - NUCLEOSIDE DIPHOSPHATE KINASE-RELATED Genomic Order:  1191
Name:  ? Seita.3G119100 Secondary Identifier:  ? PAC:32711376
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Sequence Feature Displayer

Ontology Annotation Displayer

17 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-162 Setaria italica pathologic  
Sitalica PWY-7176 Setaria italica pathologic  
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7196 Setaria italica pathologic  
Sitalica PWY-7197 Setaria italica pathologic  
Sitalica PWY-7200 Setaria italica pathologic  
Sitalica PWY-7205 Setaria italica pathologic  
Sitalica PWY-7208 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  
Sitalica PWY-7221 Setaria italica pathologic  
Sitalica PWY-7224 Setaria italica pathologic  
Sitalica PWY-7226 Setaria italica pathologic  
Sitalica PWY-7227 Setaria italica pathologic  
Sitalica PWY-7228 Setaria italica pathologic  
Sitalica PWY-7229 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G119100 0.5kb upstream 0.5kb upstream 3287 true scaffold_3: 8013307-8016593 Setaria italica
Seita.3G119100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8013307-8013806 Setaria italica
Seita.3G119100 0.5kb downstream 0.5kb downstream 3287 true scaffold_3: 8013807-8017093 Setaria italica
Seita.3G119100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8016594-8017093 Setaria italica
Seita.3G119100 1.0kb upstream 1.0kb upstream 3787 true scaffold_3: 8012807-8016593 Setaria italica
Seita.3G119100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8012807-8013806 Setaria italica
Seita.3G119100 1.0kb downstream 1.0kb downstream 3787 true scaffold_3: 8013807-8017593 Setaria italica
Seita.3G119100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8016594-8017593 Setaria italica
Seita.3G119100 2.0kb upstream 2.0kb upstream 4787 true scaffold_3: 8011807-8016593 Setaria italica
Seita.3G119100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8011807-8013806 Setaria italica
Seita.3G119100 2.0kb downstream 2.0kb downstream 4787 true scaffold_3: 8013807-8018593 Setaria italica
Seita.3G119100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8016594-8018593 Setaria italica
Seita.3G119100 5.0kb upstream 5.0kb upstream 7787 true scaffold_3: 8008807-8016593 Setaria italica
Seita.3G119100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8008807-8013806 Setaria italica
Seita.3G119100 5.0kb downstream 5.0kb downstream 7787 true scaffold_3: 8013807-8021593 Setaria italica
Seita.3G119100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8016594-8021593 Setaria italica
Seita.3G119100 10.0kb upstream 10.0kb upstream 12787 true scaffold_3: 8003807-8016593 Setaria italica
Seita.3G119100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8003807-8013806 Setaria italica
Seita.3G119100 10.0kb downstream 10.0kb downstream 12787 true scaffold_3: 8013807-8026593 Setaria italica
Seita.3G119100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8016594-8026593 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178448 5267 Panicoideae View MSA
124571614 5269 Grass View MSA
122050213 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121346571 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 83.996     High  
cufflinks 50.95     High  
cufflinks 18.797     High Low
cufflinks 24.298     High  
cufflinks 26.674     High  
cufflinks 49.186     High  
cufflinks 37.688     High  
cufflinks 92.653     High  
cufflinks 47.303     High  
cufflinks 136.137     High High
cufflinks 104.855     High High
cufflinks 54.17     High  
cufflinks 94.914     High High
cufflinks 20.3     High Low
cufflinks 77.64     High  
cufflinks 35.02     High  
cufflinks 87.45     High  
cufflinks 14.322     High Low
cufflinks 19.733     High Low
cufflinks 91.261     High  

0 Strain