Gene : Seita.3G121400 S. italica v2.2
Defline:  (1 of 2) PTHR23076//PTHR23076:SF73 - METALLOPROTEASE M41 FTSH Genomic Order:  1214
Name:  ? Seita.3G121400 Secondary Identifier:  ? PAC:32714587
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G121400 0.5kb upstream 0.5kb upstream 5190 true scaffold_3: 8167538-8172727 Setaria italica
Seita.3G121400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8167538-8168037 Setaria italica
Seita.3G121400 0.5kb downstream 0.5kb downstream 5190 true scaffold_3: 8168038-8173227 Setaria italica
Seita.3G121400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8172728-8173227 Setaria italica
Seita.3G121400 1.0kb upstream 1.0kb upstream 5690 true scaffold_3: 8167038-8172727 Setaria italica
Seita.3G121400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8167038-8168037 Setaria italica
Seita.3G121400 1.0kb downstream 1.0kb downstream 5690 true scaffold_3: 8168038-8173727 Setaria italica
Seita.3G121400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8172728-8173727 Setaria italica
Seita.3G121400 2.0kb upstream 2.0kb upstream 6690 true scaffold_3: 8166038-8172727 Setaria italica
Seita.3G121400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8166038-8168037 Setaria italica
Seita.3G121400 2.0kb downstream 2.0kb downstream 6690 true scaffold_3: 8168038-8174727 Setaria italica
Seita.3G121400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8172728-8174727 Setaria italica
Seita.3G121400 5.0kb upstream 5.0kb upstream 9690 true scaffold_3: 8163038-8172727 Setaria italica
Seita.3G121400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8163038-8168037 Setaria italica
Seita.3G121400 5.0kb downstream 5.0kb downstream 9690 true scaffold_3: 8168038-8177727 Setaria italica
Seita.3G121400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8172728-8177727 Setaria italica
Seita.3G121400 10.0kb upstream 10.0kb upstream 14690 true scaffold_3: 8158038-8172727 Setaria italica
Seita.3G121400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8158038-8168037 Setaria italica
Seita.3G121400 10.0kb downstream 10.0kb downstream 14690 true scaffold_3: 8168038-8182727 Setaria italica
Seita.3G121400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8172728-8182727 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178922 5267 Panicoideae View MSA
124583717 5269 Grass View MSA
122043793 5273 Angiosperm View MSA
121346284 5274 Embryophyte View MSA
123428638 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.772        
cufflinks 11.394       High
cufflinks 9.076        
cufflinks 7.324        
cufflinks 6.391        
cufflinks 11.398       High
cufflinks 6.279        
cufflinks 5.619        
cufflinks 4.133       Low
cufflinks 2.912       Low
cufflinks 5.944        
cufflinks 6.619        
cufflinks 7.081        
cufflinks 7.821        
cufflinks 10.685       High
cufflinks 5.496        
cufflinks 6.984        
cufflinks 5.076        
cufflinks 6.607        
cufflinks 8.749        

0 Strain