Gene : Seita.3G119900 S. italica v2.2
Defline:  (1 of 1) PTHR12225 - ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN Genomic Order:  1199
Name:  ? Seita.3G119900 Secondary Identifier:  ? PAC:32714098
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G119900 0.5kb upstream 0.5kb upstream 5080 true scaffold_3: 8060435-8065514 Setaria italica
Seita.3G119900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8060435-8060934 Setaria italica
Seita.3G119900 0.5kb downstream 0.5kb downstream 5080 true scaffold_3: 8060935-8066014 Setaria italica
Seita.3G119900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8065515-8066014 Setaria italica
Seita.3G119900 1.0kb upstream 1.0kb upstream 5580 true scaffold_3: 8059935-8065514 Setaria italica
Seita.3G119900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8059935-8060934 Setaria italica
Seita.3G119900 1.0kb downstream 1.0kb downstream 5580 true scaffold_3: 8060935-8066514 Setaria italica
Seita.3G119900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8065515-8066514 Setaria italica
Seita.3G119900 2.0kb upstream 2.0kb upstream 6580 true scaffold_3: 8058935-8065514 Setaria italica
Seita.3G119900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8058935-8060934 Setaria italica
Seita.3G119900 2.0kb downstream 2.0kb downstream 6580 true scaffold_3: 8060935-8067514 Setaria italica
Seita.3G119900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8065515-8067514 Setaria italica
Seita.3G119900 5.0kb upstream 5.0kb upstream 9580 true scaffold_3: 8055935-8065514 Setaria italica
Seita.3G119900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8055935-8060934 Setaria italica
Seita.3G119900 5.0kb downstream 5.0kb downstream 9580 true scaffold_3: 8060935-8070514 Setaria italica
Seita.3G119900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8065515-8070514 Setaria italica
Seita.3G119900 10.0kb upstream 10.0kb upstream 14580 true scaffold_3: 8050935-8065514 Setaria italica
Seita.3G119900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8050935-8060934 Setaria italica
Seita.3G119900 10.0kb downstream 10.0kb downstream 14580 true scaffold_3: 8060935-8075514 Setaria italica
Seita.3G119900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8065515-8075514 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041235 5273 Angiosperm View MSA
122183961 5267 Panicoideae View MSA
124580756 5269 Grass View MSA
121344087 5274 Embryophyte View MSA
123425149 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.16        
cufflinks 13.473     High High
cufflinks 5.412       Low
cufflinks 5.726       Low
cufflinks 5.254       Low
cufflinks 13.183       High
cufflinks 7.881        
cufflinks 11.656        
cufflinks 9.25        
cufflinks 11.491        
cufflinks 9.669        
cufflinks 9.93        
cufflinks 10.744        
cufflinks 6.458        
cufflinks 13.386       High
cufflinks 4.998       Low
cufflinks 12.485       High
cufflinks 6.27        
cufflinks 6.099       Low
cufflinks 12.178        

0 Strain