Gene : Seita.3G121600 S. italica v2.2
Defline:  (1 of 2) PTHR10799//PTHR10799:SF698 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Genomic Order:  1216
Name:  ? Seita.3G121600 Secondary Identifier:  ? PAC:32711260
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G121600 0.5kb upstream 0.5kb upstream 12458 true scaffold_3: 8192040-8204497 Setaria italica
Seita.3G121600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8192040-8192539 Setaria italica
Seita.3G121600 0.5kb downstream 0.5kb downstream 12458 true scaffold_3: 8192540-8204997 Setaria italica
Seita.3G121600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8204498-8204997 Setaria italica
Seita.3G121600 1.0kb upstream 1.0kb upstream 12958 true scaffold_3: 8191540-8204497 Setaria italica
Seita.3G121600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8191540-8192539 Setaria italica
Seita.3G121600 1.0kb downstream 1.0kb downstream 12958 true scaffold_3: 8192540-8205497 Setaria italica
Seita.3G121600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8204498-8205497 Setaria italica
Seita.3G121600 2.0kb upstream 2.0kb upstream 13958 true scaffold_3: 8190540-8204497 Setaria italica
Seita.3G121600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8190540-8192539 Setaria italica
Seita.3G121600 2.0kb downstream 2.0kb downstream 13958 true scaffold_3: 8192540-8206497 Setaria italica
Seita.3G121600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8204498-8206497 Setaria italica
Seita.3G121600 5.0kb upstream 5.0kb upstream 16958 true scaffold_3: 8187540-8204497 Setaria italica
Seita.3G121600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8187540-8192539 Setaria italica
Seita.3G121600 5.0kb downstream 5.0kb downstream 16958 true scaffold_3: 8192540-8209497 Setaria italica
Seita.3G121600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8204498-8209497 Setaria italica
Seita.3G121600 10.0kb upstream 10.0kb upstream 21958 true scaffold_3: 8182540-8204497 Setaria italica
Seita.3G121600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8182540-8192539 Setaria italica
Seita.3G121600 10.0kb downstream 10.0kb downstream 21958 true scaffold_3: 8192540-8214497 Setaria italica
Seita.3G121600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8204498-8214497 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026618 5273 Angiosperm View MSA
122181912 5267 Panicoideae View MSA
124581278 5269 Grass View MSA
121351372 5274 Embryophyte View MSA
123428399 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.228        
cufflinks 5.631       High
cufflinks 5.278        
cufflinks 3.952        
cufflinks 3.216        
cufflinks 5.248        
cufflinks 5.325        
cufflinks 2.956       Low
cufflinks 3.267        
cufflinks 2.261       Low
cufflinks 4.277        
cufflinks 3.669        
cufflinks 3.548        
cufflinks 3.747        
cufflinks 3.951        
cufflinks 6.809       High
cufflinks 2.643       Low
cufflinks 6.673       High
cufflinks 3.219        
cufflinks 3.177        

0 Strain