Gene : Seita.3G132400 S. italica v2.2
Defline:  (1 of 7) PF04450 - Peptidase of plants and bacteria (BSP) Genomic Order:  1324
Name:  ? Seita.3G132400 Secondary Identifier:  ? PAC:32710273
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G132400 0.5kb upstream 0.5kb upstream 2685 true scaffold_3: 9187623-9190307 Setaria italica
Seita.3G132400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9187623-9188122 Setaria italica
Seita.3G132400 0.5kb downstream 0.5kb downstream 2685 true scaffold_3: 9188123-9190807 Setaria italica
Seita.3G132400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9190308-9190807 Setaria italica
Seita.3G132400 1.0kb upstream 1.0kb upstream 3185 true scaffold_3: 9187123-9190307 Setaria italica
Seita.3G132400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9187123-9188122 Setaria italica
Seita.3G132400 1.0kb downstream 1.0kb downstream 3185 true scaffold_3: 9188123-9191307 Setaria italica
Seita.3G132400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9190308-9191307 Setaria italica
Seita.3G132400 2.0kb upstream 2.0kb upstream 4185 true scaffold_3: 9186123-9190307 Setaria italica
Seita.3G132400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9186123-9188122 Setaria italica
Seita.3G132400 2.0kb downstream 2.0kb downstream 4185 true scaffold_3: 9188123-9192307 Setaria italica
Seita.3G132400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9190308-9192307 Setaria italica
Seita.3G132400 5.0kb upstream 5.0kb upstream 7185 true scaffold_3: 9183123-9190307 Setaria italica
Seita.3G132400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9183123-9188122 Setaria italica
Seita.3G132400 5.0kb downstream 5.0kb downstream 7185 true scaffold_3: 9188123-9195307 Setaria italica
Seita.3G132400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9190308-9195307 Setaria italica
Seita.3G132400 10.0kb upstream 10.0kb upstream 12185 true scaffold_3: 9178123-9190307 Setaria italica
Seita.3G132400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9178123-9188122 Setaria italica
Seita.3G132400 10.0kb downstream 10.0kb downstream 12185 true scaffold_3: 9188123-9200307 Setaria italica
Seita.3G132400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9190308-9200307 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182911 5267 Panicoideae View MSA
124586096 5269 Grass View MSA
122048300 5273 Angiosperm View MSA
121310921 5274 Embryophyte View MSA
123348293 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.011        
cufflinks 6.538        
cufflinks 0.247       Low
cufflinks 0.141       Low
cufflinks 0.446        
cufflinks 8.819        
cufflinks 1.268        
cufflinks 1.222        
cufflinks 0.195       Low
cufflinks 23.753     High High
cufflinks 14.524     High High
cufflinks 1.933        
cufflinks 8.753        
cufflinks 0.616        
cufflinks 6.47        
cufflinks 1.581        
cufflinks 5.625        
cufflinks 0.218       Low
cufflinks 0.898        
cufflinks 5.635        

0 Strain