Gene : Seita.3G133200 S. italica v2.2
Defline:  (1 of 3) PTHR12585:SF26 - SISTER CHROMATID COHESION 1 PROTEIN 1 Genomic Order:  1332
Name:  ? Seita.3G133200 Secondary Identifier:  ? PAC:32710262
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G133200 0.5kb upstream 0.5kb upstream 6331 true scaffold_3: 9230826-9237156 Setaria italica
Seita.3G133200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9236657-9237156 Setaria italica
Seita.3G133200 0.5kb downstream 0.5kb downstream 6331 true scaffold_3: 9230326-9236656 Setaria italica
Seita.3G133200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9230326-9230825 Setaria italica
Seita.3G133200 1.0kb upstream 1.0kb upstream 6831 true scaffold_3: 9230826-9237656 Setaria italica
Seita.3G133200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9236657-9237656 Setaria italica
Seita.3G133200 1.0kb downstream 1.0kb downstream 6831 true scaffold_3: 9229826-9236656 Setaria italica
Seita.3G133200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9229826-9230825 Setaria italica
Seita.3G133200 2.0kb upstream 2.0kb upstream 7831 true scaffold_3: 9230826-9238656 Setaria italica
Seita.3G133200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9236657-9238656 Setaria italica
Seita.3G133200 2.0kb downstream 2.0kb downstream 7831 true scaffold_3: 9228826-9236656 Setaria italica
Seita.3G133200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9228826-9230825 Setaria italica
Seita.3G133200 5.0kb upstream 5.0kb upstream 10831 true scaffold_3: 9230826-9241656 Setaria italica
Seita.3G133200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9236657-9241656 Setaria italica
Seita.3G133200 5.0kb downstream 5.0kb downstream 10831 true scaffold_3: 9225826-9236656 Setaria italica
Seita.3G133200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9225826-9230825 Setaria italica
Seita.3G133200 10.0kb upstream 10.0kb upstream 15831 true scaffold_3: 9230826-9246656 Setaria italica
Seita.3G133200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9236657-9246656 Setaria italica
Seita.3G133200 10.0kb downstream 10.0kb downstream 15831 true scaffold_3: 9220826-9236656 Setaria italica
Seita.3G133200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9220826-9230825 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177292 5267 Panicoideae View MSA
124591006 5269 Grass View MSA
122042862 5273 Angiosperm View MSA
121347788 5274 Embryophyte View MSA
123426470 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.151       High
cufflinks 0.965        
cufflinks 0.812        
cufflinks 0.477       Low
cufflinks 0.492       Low
cufflinks 1.161       High
cufflinks 0.978        
cufflinks 0.813        
cufflinks 0.92        
cufflinks 0.579        
cufflinks 0.746        
cufflinks 0.825        
cufflinks 0.269       Low
cufflinks 0.799        
cufflinks 0.684        
cufflinks 1.044        
cufflinks 0.797        
cufflinks 1.046        
cufflinks 0.448       Low
cufflinks 0.724        

0 Strain