Gene : Seita.3G131500 S. italica v2.2
Defline:  (1 of 30) PF08659 - KR domain (KR) Genomic Order:  1315
Name:  ? Seita.3G131500 Secondary Identifier:  ? PAC:32712182
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G131500 0.5kb upstream 0.5kb upstream 4848 true scaffold_3: 9110608-9115455 Setaria italica
Seita.3G131500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9114956-9115455 Setaria italica
Seita.3G131500 0.5kb downstream 0.5kb downstream 4848 true scaffold_3: 9110108-9114955 Setaria italica
Seita.3G131500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9110108-9110607 Setaria italica
Seita.3G131500 1.0kb upstream 1.0kb upstream 5348 true scaffold_3: 9110608-9115955 Setaria italica
Seita.3G131500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9114956-9115955 Setaria italica
Seita.3G131500 1.0kb downstream 1.0kb downstream 5348 true scaffold_3: 9109608-9114955 Setaria italica
Seita.3G131500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9109608-9110607 Setaria italica
Seita.3G131500 2.0kb upstream 2.0kb upstream 6348 true scaffold_3: 9110608-9116955 Setaria italica
Seita.3G131500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9114956-9116955 Setaria italica
Seita.3G131500 2.0kb downstream 2.0kb downstream 6348 true scaffold_3: 9108608-9114955 Setaria italica
Seita.3G131500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9108608-9110607 Setaria italica
Seita.3G131500 5.0kb upstream 5.0kb upstream 9348 true scaffold_3: 9110608-9119955 Setaria italica
Seita.3G131500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9114956-9119955 Setaria italica
Seita.3G131500 5.0kb downstream 5.0kb downstream 9348 true scaffold_3: 9105608-9114955 Setaria italica
Seita.3G131500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9105608-9110607 Setaria italica
Seita.3G131500 10.0kb upstream 10.0kb upstream 14348 true scaffold_3: 9110608-9124955 Setaria italica
Seita.3G131500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9114956-9124955 Setaria italica
Seita.3G131500 10.0kb downstream 10.0kb downstream 14348 true scaffold_3: 9100608-9114955 Setaria italica
Seita.3G131500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9100608-9110607 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189151 5267 Panicoideae View MSA
124577347 5269 Grass View MSA
122045788 5273 Angiosperm View MSA
121345146 5274 Embryophyte View MSA
123424405 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.687        
cufflinks 11.117        
cufflinks 8.204       Low
cufflinks 8.657        
cufflinks 8.978        
cufflinks 10.563        
cufflinks 8.359       Low
cufflinks 14.279     High High
cufflinks 9.663        
cufflinks 14.719       High
cufflinks 9.734        
cufflinks 14.6     High High
cufflinks 15.127     High High
cufflinks 11.44        
cufflinks 11.107        
cufflinks 5.988       Low
cufflinks 15.081     High High
cufflinks 10.609        
cufflinks 10.782        
cufflinks 14.949     High High

0 Strain