Gene : Seita.3G217800 S. italica v2.2
Defline:  (1 of 4) PTHR11062:SF105 - BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED Genomic Order:  2178
Name:  ? Seita.3G217800 Secondary Identifier:  ? PAC:32711117
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5980 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G217800 0.5kb upstream 0.5kb upstream 4158 true scaffold_3: 17640864-17645021 Setaria italica
Seita.3G217800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 17640864-17641363 Setaria italica
Seita.3G217800 0.5kb downstream 0.5kb downstream 4158 true scaffold_3: 17641364-17645521 Setaria italica
Seita.3G217800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 17645022-17645521 Setaria italica
Seita.3G217800 1.0kb upstream 1.0kb upstream 4658 true scaffold_3: 17640364-17645021 Setaria italica
Seita.3G217800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 17640364-17641363 Setaria italica
Seita.3G217800 1.0kb downstream 1.0kb downstream 4658 true scaffold_3: 17641364-17646021 Setaria italica
Seita.3G217800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 17645022-17646021 Setaria italica
Seita.3G217800 2.0kb upstream 2.0kb upstream 5658 true scaffold_3: 17639364-17645021 Setaria italica
Seita.3G217800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 17639364-17641363 Setaria italica
Seita.3G217800 2.0kb downstream 2.0kb downstream 5658 true scaffold_3: 17641364-17647021 Setaria italica
Seita.3G217800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 17645022-17647021 Setaria italica
Seita.3G217800 5.0kb upstream 5.0kb upstream 8658 true scaffold_3: 17636364-17645021 Setaria italica
Seita.3G217800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 17636364-17641363 Setaria italica
Seita.3G217800 5.0kb downstream 5.0kb downstream 8658 true scaffold_3: 17641364-17650021 Setaria italica
Seita.3G217800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 17645022-17650021 Setaria italica
Seita.3G217800 10.0kb upstream 10.0kb upstream 13658 true scaffold_3: 17631364-17645021 Setaria italica
Seita.3G217800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 17631364-17641363 Setaria italica
Seita.3G217800 10.0kb downstream 10.0kb downstream 13658 true scaffold_3: 17641364-17655021 Setaria italica
Seita.3G217800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 17645022-17655021 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121894257 5273 Angiosperm View MSA
122181259 5267 Panicoideae View MSA
124465633 5269 Grass View MSA
121164836 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.515        
cufflinks 5.106       High
cufflinks 0.005     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.085        
cufflinks 7.454       High
cufflinks 1.121        
cufflinks 0.381        
cufflinks 0.675        
cufflinks 0.588        
cufflinks 0.669        
cufflinks 0.738        
cufflinks 5.764       High
cufflinks 0.006     Low Low
cufflinks 4.268       High
cufflinks 0.202        
cufflinks 0.953        
cufflinks 0.078     Low  
cufflinks 0.046     Low Low
cufflinks 2.435        

0 Strain