Gene : Seita.3G220100 S. italica v2.2
Defline:  (1 of 1) PTHR12822:SF5 - INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN Genomic Order:  2201
Name:  ? Seita.3G220100 Secondary Identifier:  ? PAC:32712814
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G220100 0.5kb upstream 0.5kb upstream 3866 true scaffold_3: 17808422-17812287 Setaria italica
Seita.3G220100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 17811788-17812287 Setaria italica
Seita.3G220100 0.5kb downstream 0.5kb downstream 3866 true scaffold_3: 17807922-17811787 Setaria italica
Seita.3G220100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 17807922-17808421 Setaria italica
Seita.3G220100 1.0kb upstream 1.0kb upstream 4366 true scaffold_3: 17808422-17812787 Setaria italica
Seita.3G220100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 17811788-17812787 Setaria italica
Seita.3G220100 1.0kb downstream 1.0kb downstream 4366 true scaffold_3: 17807422-17811787 Setaria italica
Seita.3G220100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 17807422-17808421 Setaria italica
Seita.3G220100 2.0kb upstream 2.0kb upstream 5366 true scaffold_3: 17808422-17813787 Setaria italica
Seita.3G220100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 17811788-17813787 Setaria italica
Seita.3G220100 2.0kb downstream 2.0kb downstream 5366 true scaffold_3: 17806422-17811787 Setaria italica
Seita.3G220100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 17806422-17808421 Setaria italica
Seita.3G220100 5.0kb upstream 5.0kb upstream 8366 true scaffold_3: 17808422-17816787 Setaria italica
Seita.3G220100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 17811788-17816787 Setaria italica
Seita.3G220100 5.0kb downstream 5.0kb downstream 8366 true scaffold_3: 17803422-17811787 Setaria italica
Seita.3G220100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 17803422-17808421 Setaria italica
Seita.3G220100 10.0kb upstream 10.0kb upstream 13366 true scaffold_3: 17808422-17821787 Setaria italica
Seita.3G220100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 17811788-17821787 Setaria italica
Seita.3G220100 10.0kb downstream 10.0kb downstream 13366 true scaffold_3: 17798422-17811787 Setaria italica
Seita.3G220100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 17798422-17808421 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182110 5267 Panicoideae View MSA
124577175 5269 Grass View MSA
122048759 5273 Angiosperm View MSA
121311097 5274 Embryophyte View MSA
123427303 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.882     High  
cufflinks 14.34     High  
cufflinks 8.83       Low
cufflinks 7.574       Low
cufflinks 7.307       Low
cufflinks 16.251     High  
cufflinks 11.717        
cufflinks 12.582        
cufflinks 7.923       Low
cufflinks 17.098     High  
cufflinks 16.371     High  
cufflinks 40.317     High High
cufflinks 21.031     High  
cufflinks 9.923        
cufflinks 21.368     High  
cufflinks 13.901     High  
cufflinks 20.243     High  
cufflinks 43.861     High High
cufflinks 9.325        
cufflinks 20.083     High  

0 Strain