Gene : Seita.3G222800 S. italica v2.2
Defline:  (1 of 3) PTHR24006:SF428 - CORONATINE-INSENSITIVE PROTEIN 1 Genomic Order:  2228
Name:  ? Seita.3G222800 Secondary Identifier:  ? PAC:32713030
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G222800 0.5kb upstream 0.5kb upstream 4228 true scaffold_3: 18170757-18174984 Setaria italica
Seita.3G222800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 18174485-18174984 Setaria italica
Seita.3G222800 0.5kb downstream 0.5kb downstream 4228 true scaffold_3: 18170257-18174484 Setaria italica
Seita.3G222800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 18170257-18170756 Setaria italica
Seita.3G222800 1.0kb upstream 1.0kb upstream 4728 true scaffold_3: 18170757-18175484 Setaria italica
Seita.3G222800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 18174485-18175484 Setaria italica
Seita.3G222800 1.0kb downstream 1.0kb downstream 4728 true scaffold_3: 18169757-18174484 Setaria italica
Seita.3G222800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 18169757-18170756 Setaria italica
Seita.3G222800 2.0kb upstream 2.0kb upstream 5728 true scaffold_3: 18170757-18176484 Setaria italica
Seita.3G222800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 18174485-18176484 Setaria italica
Seita.3G222800 2.0kb downstream 2.0kb downstream 5728 true scaffold_3: 18168757-18174484 Setaria italica
Seita.3G222800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 18168757-18170756 Setaria italica
Seita.3G222800 5.0kb upstream 5.0kb upstream 8728 true scaffold_3: 18170757-18179484 Setaria italica
Seita.3G222800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 18174485-18179484 Setaria italica
Seita.3G222800 5.0kb downstream 5.0kb downstream 8728 true scaffold_3: 18165757-18174484 Setaria italica
Seita.3G222800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 18165757-18170756 Setaria italica
Seita.3G222800 10.0kb upstream 10.0kb upstream 13728 true scaffold_3: 18170757-18184484 Setaria italica
Seita.3G222800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 18174485-18184484 Setaria italica
Seita.3G222800 10.0kb downstream 10.0kb downstream 13728 true scaffold_3: 18160757-18174484 Setaria italica
Seita.3G222800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 18160757-18170756 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176164 5267 Panicoideae View MSA
124586472 5269 Grass View MSA
122042626 5273 Angiosperm View MSA
121349676 5274 Embryophyte View MSA
123381396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.371     High  
cufflinks 42.172     High  
cufflinks 91.719     High High
cufflinks 80.885     High High
cufflinks 52.113     High  
cufflinks 45.268     High  
cufflinks 37.466     High Low
cufflinks 40.27     High  
cufflinks 21.79     High Low
cufflinks 38.432     High  
cufflinks 47.893     High  
cufflinks 64.589     High  
cufflinks 82.607     High High
cufflinks 73.592     High  
cufflinks 52.947     High  
cufflinks 53.88     High  
cufflinks 69.734     High  
cufflinks 49.317     High  
cufflinks 79.906     High High
cufflinks 53.835     High  

0 Strain