Gene : Seita.3G223500 S. italica v2.2
Defline:  (1 of 2) PTHR22950:SF256 - AUXIN TRANSPORTER PROTEIN 1-RELATED Genomic Order:  2235
Name:  ? Seita.3G223500 Secondary Identifier:  ? PAC:32713253
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G223500 0.5kb upstream 0.5kb upstream 6525 true scaffold_3: 18347259-18353783 Setaria italica
Seita.3G223500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 18347259-18347758 Setaria italica
Seita.3G223500 0.5kb downstream 0.5kb downstream 6525 true scaffold_3: 18347759-18354283 Setaria italica
Seita.3G223500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 18353784-18354283 Setaria italica
Seita.3G223500 1.0kb upstream 1.0kb upstream 7025 true scaffold_3: 18346759-18353783 Setaria italica
Seita.3G223500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 18346759-18347758 Setaria italica
Seita.3G223500 1.0kb downstream 1.0kb downstream 7025 true scaffold_3: 18347759-18354783 Setaria italica
Seita.3G223500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 18353784-18354783 Setaria italica
Seita.3G223500 2.0kb upstream 2.0kb upstream 8025 true scaffold_3: 18345759-18353783 Setaria italica
Seita.3G223500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 18345759-18347758 Setaria italica
Seita.3G223500 2.0kb downstream 2.0kb downstream 8025 true scaffold_3: 18347759-18355783 Setaria italica
Seita.3G223500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 18353784-18355783 Setaria italica
Seita.3G223500 5.0kb upstream 5.0kb upstream 11025 true scaffold_3: 18342759-18353783 Setaria italica
Seita.3G223500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 18342759-18347758 Setaria italica
Seita.3G223500 5.0kb downstream 5.0kb downstream 11025 true scaffold_3: 18347759-18358783 Setaria italica
Seita.3G223500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 18353784-18358783 Setaria italica
Seita.3G223500 10.0kb upstream 10.0kb upstream 16025 true scaffold_3: 18337759-18353783 Setaria italica
Seita.3G223500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 18337759-18347758 Setaria italica
Seita.3G223500 10.0kb downstream 10.0kb downstream 16025 true scaffold_3: 18347759-18363783 Setaria italica
Seita.3G223500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 18353784-18363783 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178114 5267 Panicoideae View MSA
124584451 5269 Grass View MSA
122045744 5273 Angiosperm View MSA
121347395 5274 Embryophyte View MSA
123427582 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.859       High
cufflinks 1.51        
cufflinks 0.278       Low
cufflinks 0.229       Low
cufflinks 0.214       Low
cufflinks 2.289       High
cufflinks 0.944        
cufflinks 1.056        
cufflinks 0.452        
cufflinks 2.291       High
cufflinks 1.817       High
cufflinks 0.513        
cufflinks 1.156        
cufflinks 0.381        
cufflinks 1.176        
cufflinks 0.65        
cufflinks 0.769        
cufflinks 0.28       Low
cufflinks 0.116       Low
cufflinks 0.757        

0 Strain