Gene : Seita.3G223700 S. italica v2.2
Defline:  (1 of 1) 2.4.1.19 - Cyclomaltodextrin glucanotransferase / Cyclodextrin glycosyltransferase Genomic Order:  2237
Name:  ? Seita.3G223700 Secondary Identifier:  ? PAC:32710236
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G223700 0.5kb upstream 0.5kb upstream 3543 true scaffold_3: 18357804-18361346 Setaria italica
Seita.3G223700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 18357804-18358303 Setaria italica
Seita.3G223700 0.5kb downstream 0.5kb downstream 3543 true scaffold_3: 18358304-18361846 Setaria italica
Seita.3G223700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 18361347-18361846 Setaria italica
Seita.3G223700 1.0kb upstream 1.0kb upstream 4043 true scaffold_3: 18357304-18361346 Setaria italica
Seita.3G223700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 18357304-18358303 Setaria italica
Seita.3G223700 1.0kb downstream 1.0kb downstream 4043 true scaffold_3: 18358304-18362346 Setaria italica
Seita.3G223700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 18361347-18362346 Setaria italica
Seita.3G223700 2.0kb upstream 2.0kb upstream 5043 true scaffold_3: 18356304-18361346 Setaria italica
Seita.3G223700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 18356304-18358303 Setaria italica
Seita.3G223700 2.0kb downstream 2.0kb downstream 5043 true scaffold_3: 18358304-18363346 Setaria italica
Seita.3G223700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 18361347-18363346 Setaria italica
Seita.3G223700 5.0kb upstream 5.0kb upstream 8043 true scaffold_3: 18353304-18361346 Setaria italica
Seita.3G223700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 18353304-18358303 Setaria italica
Seita.3G223700 5.0kb downstream 5.0kb downstream 8043 true scaffold_3: 18358304-18366346 Setaria italica
Seita.3G223700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 18361347-18366346 Setaria italica
Seita.3G223700 10.0kb upstream 10.0kb upstream 13043 true scaffold_3: 18348304-18361346 Setaria italica
Seita.3G223700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 18348304-18358303 Setaria italica
Seita.3G223700 10.0kb downstream 10.0kb downstream 13043 true scaffold_3: 18358304-18371346 Setaria italica
Seita.3G223700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 18361347-18371346 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175085 5267 Panicoideae View MSA
124579732 5269 Grass View MSA
122047143 5273 Angiosperm View MSA
123429164 5275 Viridiplantae View MSA
121348122 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.737        
cufflinks 2.468        
cufflinks 1.193        
cufflinks 1.381        
cufflinks 0.833       Low
cufflinks 3.46       High
cufflinks 0.888       Low
cufflinks 1.59        
cufflinks 1.051        
cufflinks 1.246        
cufflinks 1.526        
cufflinks 3.93       High
cufflinks 0.758       Low
cufflinks 1.56        
cufflinks 1.198        
cufflinks 0.875       Low
cufflinks 2.693       High
cufflinks 1.489        
cufflinks 3.464       High
cufflinks 1.466        

0 Strain