Gene : Seita.3G234000 S. italica v2.2
Defline:  (1 of 2) PTHR11214//PTHR11214:SF100 - BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE Genomic Order:  2340
Name:  ? Seita.3G234000 Secondary Identifier:  ? PAC:32712824
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G234000 0.5kb upstream 0.5kb upstream 3752 true scaffold_3: 19418397-19422148 Setaria italica
Seita.3G234000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19418397-19418896 Setaria italica
Seita.3G234000 0.5kb downstream 0.5kb downstream 3752 true scaffold_3: 19418897-19422648 Setaria italica
Seita.3G234000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19422149-19422648 Setaria italica
Seita.3G234000 1.0kb upstream 1.0kb upstream 4252 true scaffold_3: 19417897-19422148 Setaria italica
Seita.3G234000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19417897-19418896 Setaria italica
Seita.3G234000 1.0kb downstream 1.0kb downstream 4252 true scaffold_3: 19418897-19423148 Setaria italica
Seita.3G234000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19422149-19423148 Setaria italica
Seita.3G234000 2.0kb upstream 2.0kb upstream 5252 true scaffold_3: 19416897-19422148 Setaria italica
Seita.3G234000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19416897-19418896 Setaria italica
Seita.3G234000 2.0kb downstream 2.0kb downstream 5252 true scaffold_3: 19418897-19424148 Setaria italica
Seita.3G234000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19422149-19424148 Setaria italica
Seita.3G234000 5.0kb upstream 5.0kb upstream 8252 true scaffold_3: 19413897-19422148 Setaria italica
Seita.3G234000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19413897-19418896 Setaria italica
Seita.3G234000 5.0kb downstream 5.0kb downstream 8252 true scaffold_3: 19418897-19427148 Setaria italica
Seita.3G234000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19422149-19427148 Setaria italica
Seita.3G234000 10.0kb upstream 10.0kb upstream 13252 true scaffold_3: 19408897-19422148 Setaria italica
Seita.3G234000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19408897-19418896 Setaria italica
Seita.3G234000 10.0kb downstream 10.0kb downstream 13252 true scaffold_3: 19418897-19432148 Setaria italica
Seita.3G234000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19422149-19432148 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175895 5267 Panicoideae View MSA
124577134 5269 Grass View MSA
122048102 5273 Angiosperm View MSA
121348547 5274 Embryophyte View MSA
123427932 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low  
cufflinks 3.807       High
cufflinks 0.006     Low  
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.69       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.006     Low  
cufflinks 0.005     Low  
cufflinks 0.073     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  

0 Strain