Gene : Seita.3G233200 S. italica v2.2
Defline:  (1 of 1) PF02140//PF02449 - Galactose binding lectin domain (Gal_Lectin) // Beta-galactosidase (Glyco_hydro_42) Genomic Order:  2332
Name:  ? Seita.3G233200 Secondary Identifier:  ? PAC:32710572
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G233200 0.5kb upstream 0.5kb upstream 9260 true scaffold_3: 19344088-19353347 Setaria italica
Seita.3G233200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19344088-19344587 Setaria italica
Seita.3G233200 0.5kb downstream 0.5kb downstream 9260 true scaffold_3: 19344588-19353847 Setaria italica
Seita.3G233200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19353348-19353847 Setaria italica
Seita.3G233200 1.0kb upstream 1.0kb upstream 9760 true scaffold_3: 19343588-19353347 Setaria italica
Seita.3G233200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19343588-19344587 Setaria italica
Seita.3G233200 1.0kb downstream 1.0kb downstream 9760 true scaffold_3: 19344588-19354347 Setaria italica
Seita.3G233200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19353348-19354347 Setaria italica
Seita.3G233200 2.0kb upstream 2.0kb upstream 10760 true scaffold_3: 19342588-19353347 Setaria italica
Seita.3G233200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19342588-19344587 Setaria italica
Seita.3G233200 2.0kb downstream 2.0kb downstream 10760 true scaffold_3: 19344588-19355347 Setaria italica
Seita.3G233200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19353348-19355347 Setaria italica
Seita.3G233200 5.0kb upstream 5.0kb upstream 13760 true scaffold_3: 19339588-19353347 Setaria italica
Seita.3G233200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19339588-19344587 Setaria italica
Seita.3G233200 5.0kb downstream 5.0kb downstream 13760 true scaffold_3: 19344588-19358347 Setaria italica
Seita.3G233200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19353348-19358347 Setaria italica
Seita.3G233200 10.0kb upstream 10.0kb upstream 18760 true scaffold_3: 19334588-19353347 Setaria italica
Seita.3G233200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19334588-19344587 Setaria italica
Seita.3G233200 10.0kb downstream 10.0kb downstream 18760 true scaffold_3: 19344588-19363347 Setaria italica
Seita.3G233200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19353348-19363347 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199889 5267 Panicoideae View MSA
124584297 5269 Grass View MSA
122045958 5273 Angiosperm View MSA
121310530 5274 Embryophyte View MSA
123428653 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.394        
cufflinks 1.261       High
cufflinks 0.006     Low Low
cufflinks 0.006     Low Low
cufflinks 0.013     Low Low
cufflinks 0.711       High
cufflinks 0.235        
cufflinks 0.083     Low  
cufflinks 0.146        
cufflinks 0.223     Low  
cufflinks 0.976       High
cufflinks 0.291        
cufflinks 0.296        
cufflinks 0.009     Low Low
cufflinks 0.743       High
cufflinks 0.058     Low  
cufflinks 0.34        
cufflinks 0.075     Low  
cufflinks 0.047     Low  
cufflinks 0.448        

0 Strain