Gene : Seita.3G236400 S. italica v2.2
Defline:  (1 of 9) KOG2922 - Uncharacterized conserved protein Genomic Order:  2364
Name:  ? Seita.3G236400 Secondary Identifier:  ? PAC:32710295
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G236400 0.5kb upstream 0.5kb upstream 4711 true scaffold_3: 19831320-19836030 Setaria italica
Seita.3G236400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19831320-19831819 Setaria italica
Seita.3G236400 0.5kb downstream 0.5kb downstream 4711 true scaffold_3: 19831820-19836530 Setaria italica
Seita.3G236400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19836031-19836530 Setaria italica
Seita.3G236400 1.0kb upstream 1.0kb upstream 5211 true scaffold_3: 19830820-19836030 Setaria italica
Seita.3G236400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19830820-19831819 Setaria italica
Seita.3G236400 1.0kb downstream 1.0kb downstream 5211 true scaffold_3: 19831820-19837030 Setaria italica
Seita.3G236400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19836031-19837030 Setaria italica
Seita.3G236400 2.0kb upstream 2.0kb upstream 6211 true scaffold_3: 19829820-19836030 Setaria italica
Seita.3G236400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19829820-19831819 Setaria italica
Seita.3G236400 2.0kb downstream 2.0kb downstream 6211 true scaffold_3: 19831820-19838030 Setaria italica
Seita.3G236400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19836031-19838030 Setaria italica
Seita.3G236400 5.0kb upstream 5.0kb upstream 9211 true scaffold_3: 19826820-19836030 Setaria italica
Seita.3G236400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19826820-19831819 Setaria italica
Seita.3G236400 5.0kb downstream 5.0kb downstream 9211 true scaffold_3: 19831820-19841030 Setaria italica
Seita.3G236400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19836031-19841030 Setaria italica
Seita.3G236400 10.0kb upstream 10.0kb upstream 14211 true scaffold_3: 19821820-19836030 Setaria italica
Seita.3G236400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19821820-19831819 Setaria italica
Seita.3G236400 10.0kb downstream 10.0kb downstream 14211 true scaffold_3: 19831820-19846030 Setaria italica
Seita.3G236400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19836031-19846030 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178461 5267 Panicoideae View MSA
124574188 5269 Grass View MSA
122049852 5273 Angiosperm View MSA
121350958 5274 Embryophyte View MSA
123428746 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.518        
cufflinks 11.156       High
cufflinks 3.354       Low
cufflinks 3.413       Low
cufflinks 4.262       Low
cufflinks 12.679       High
cufflinks 6.197        
cufflinks 6.636        
cufflinks 5.964        
cufflinks 8.312        
cufflinks 8.329        
cufflinks 8.626        
cufflinks 11.174       High
cufflinks 3.85       Low
cufflinks 12.178       High
cufflinks 5.257        
cufflinks 10.533        
cufflinks 4.707        
cufflinks 3.555       Low
cufflinks 10.72        

0 Strain