Gene : Seita.3G235800 S. italica v2.2
Defline:  (1 of 1) PTHR22951//PTHR22951:SF12 - CLATHRIN ASSEMBLY PROTEIN Genomic Order:  2358
Name:  ? Seita.3G235800 Secondary Identifier:  ? PAC:32712474
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G235800 0.5kb upstream 0.5kb upstream 2463 true scaffold_3: 19653631-19656093 Setaria italica
Seita.3G235800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19655594-19656093 Setaria italica
Seita.3G235800 0.5kb downstream 0.5kb downstream 2463 true scaffold_3: 19653131-19655593 Setaria italica
Seita.3G235800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19653131-19653630 Setaria italica
Seita.3G235800 1.0kb upstream 1.0kb upstream 2963 true scaffold_3: 19653631-19656593 Setaria italica
Seita.3G235800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19655594-19656593 Setaria italica
Seita.3G235800 1.0kb downstream 1.0kb downstream 2963 true scaffold_3: 19652631-19655593 Setaria italica
Seita.3G235800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19652631-19653630 Setaria italica
Seita.3G235800 2.0kb upstream 2.0kb upstream 3963 true scaffold_3: 19653631-19657593 Setaria italica
Seita.3G235800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19655594-19657593 Setaria italica
Seita.3G235800 2.0kb downstream 2.0kb downstream 3963 true scaffold_3: 19651631-19655593 Setaria italica
Seita.3G235800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19651631-19653630 Setaria italica
Seita.3G235800 5.0kb upstream 5.0kb upstream 6963 true scaffold_3: 19653631-19660593 Setaria italica
Seita.3G235800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19655594-19660593 Setaria italica
Seita.3G235800 5.0kb downstream 5.0kb downstream 6963 true scaffold_3: 19648631-19655593 Setaria italica
Seita.3G235800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19648631-19653630 Setaria italica
Seita.3G235800 10.0kb upstream 10.0kb upstream 11963 true scaffold_3: 19653631-19665593 Setaria italica
Seita.3G235800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19655594-19665593 Setaria italica
Seita.3G235800 10.0kb downstream 10.0kb downstream 11963 true scaffold_3: 19643631-19655593 Setaria italica
Seita.3G235800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19643631-19653630 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175555 5267 Panicoideae View MSA
124570034 5269 Grass View MSA
122050548 5273 Angiosperm View MSA
123428889 5275 Viridiplantae View MSA
121311984 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.031     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low Low
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain