Gene : Seita.3G239300 S. italica v2.2
Defline:  (1 of 3) PTHR31942:SF19 - MLO-LIKE PROTEIN 13 Genomic Order:  2393
Name:  ? Seita.3G239300 Secondary Identifier:  ? PAC:32710466
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G239300 0.5kb upstream 0.5kb upstream 5346 true scaffold_3: 20270809-20276154 Setaria italica
Seita.3G239300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 20270809-20271308 Setaria italica
Seita.3G239300 0.5kb downstream 0.5kb downstream 5346 true scaffold_3: 20271309-20276654 Setaria italica
Seita.3G239300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 20276155-20276654 Setaria italica
Seita.3G239300 1.0kb upstream 1.0kb upstream 5846 true scaffold_3: 20270309-20276154 Setaria italica
Seita.3G239300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 20270309-20271308 Setaria italica
Seita.3G239300 1.0kb downstream 1.0kb downstream 5846 true scaffold_3: 20271309-20277154 Setaria italica
Seita.3G239300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 20276155-20277154 Setaria italica
Seita.3G239300 2.0kb upstream 2.0kb upstream 6846 true scaffold_3: 20269309-20276154 Setaria italica
Seita.3G239300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 20269309-20271308 Setaria italica
Seita.3G239300 2.0kb downstream 2.0kb downstream 6846 true scaffold_3: 20271309-20278154 Setaria italica
Seita.3G239300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 20276155-20278154 Setaria italica
Seita.3G239300 5.0kb upstream 5.0kb upstream 9846 true scaffold_3: 20266309-20276154 Setaria italica
Seita.3G239300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 20266309-20271308 Setaria italica
Seita.3G239300 5.0kb downstream 5.0kb downstream 9846 true scaffold_3: 20271309-20281154 Setaria italica
Seita.3G239300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 20276155-20281154 Setaria italica
Seita.3G239300 10.0kb upstream 10.0kb upstream 14846 true scaffold_3: 20261309-20276154 Setaria italica
Seita.3G239300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 20261309-20271308 Setaria italica
Seita.3G239300 10.0kb downstream 10.0kb downstream 14846 true scaffold_3: 20271309-20286154 Setaria italica
Seita.3G239300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 20276155-20286154 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181771 5267 Panicoideae View MSA
124581805 5269 Grass View MSA
122050159 5273 Angiosperm View MSA
121350481 5274 Embryophyte View MSA
123428182 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.84        
cufflinks 2.871        
cufflinks 6.273       High
cufflinks 5.101        
cufflinks 3.205        
cufflinks 2.225        
cufflinks 5.054        
cufflinks 3.66        
cufflinks 2.603        
cufflinks 2.366        
cufflinks 3.126        
cufflinks 1.561       Low
cufflinks 3.36        
cufflinks 7.201       High
cufflinks 2.143        
cufflinks 4.19        
cufflinks 1.319       Low
cufflinks 4.693        
cufflinks 4.912        
cufflinks 1.507       Low

0 Strain