Gene : Seita.3G240700 S. italica v2.2
Defline:  (1 of 6) 3.2.1.52 - Beta-N-acetylhexosaminidase / N-acetyl-beta-glucosaminidase Genomic Order:  2407
Name:  ? Seita.3G240700 Secondary Identifier:  ? PAC:32710312
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6902 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G240700 0.5kb upstream 0.5kb upstream 5763 true scaffold_3: 20463712-20469474 Setaria italica
Seita.3G240700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 20468975-20469474 Setaria italica
Seita.3G240700 0.5kb downstream 0.5kb downstream 5763 true scaffold_3: 20463212-20468974 Setaria italica
Seita.3G240700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 20463212-20463711 Setaria italica
Seita.3G240700 1.0kb upstream 1.0kb upstream 6263 true scaffold_3: 20463712-20469974 Setaria italica
Seita.3G240700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 20468975-20469974 Setaria italica
Seita.3G240700 1.0kb downstream 1.0kb downstream 6263 true scaffold_3: 20462712-20468974 Setaria italica
Seita.3G240700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 20462712-20463711 Setaria italica
Seita.3G240700 2.0kb upstream 2.0kb upstream 7263 true scaffold_3: 20463712-20470974 Setaria italica
Seita.3G240700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 20468975-20470974 Setaria italica
Seita.3G240700 2.0kb downstream 2.0kb downstream 7263 true scaffold_3: 20461712-20468974 Setaria italica
Seita.3G240700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 20461712-20463711 Setaria italica
Seita.3G240700 5.0kb upstream 5.0kb upstream 10263 true scaffold_3: 20463712-20473974 Setaria italica
Seita.3G240700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 20468975-20473974 Setaria italica
Seita.3G240700 5.0kb downstream 5.0kb downstream 10263 true scaffold_3: 20458712-20468974 Setaria italica
Seita.3G240700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 20458712-20463711 Setaria italica
Seita.3G240700 10.0kb upstream 10.0kb upstream 15263 true scaffold_3: 20463712-20478974 Setaria italica
Seita.3G240700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 20468975-20478974 Setaria italica
Seita.3G240700 10.0kb downstream 10.0kb downstream 15263 true scaffold_3: 20453712-20468974 Setaria italica
Seita.3G240700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 20453712-20463711 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178301 5267 Panicoideae View MSA
124576721 5269 Grass View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.728        
cufflinks 9.348        
cufflinks 0.011     Low Low
cufflinks 0.038     Low Low
cufflinks 1.165        
cufflinks 9.634        
cufflinks 9.541        
cufflinks 7.218        
cufflinks 9.395        
cufflinks 4.507        
cufflinks 6.393        
cufflinks 4.151        
cufflinks 7.758        
cufflinks 0.015     Low Low
cufflinks 5.969        
cufflinks 2.701        
cufflinks 5.247        
cufflinks 1.042        
cufflinks 0.1       Low
cufflinks 7.635        

0 Strain