Gene : Seita.3G240000 S. italica v2.2
Defline:  (1 of 1) PTHR31742:SF1 - RPA-INTERACTING PROTEIN Genomic Order:  2400
Name:  ? Seita.3G240000 Secondary Identifier:  ? PAC:32714034
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G240000 0.5kb upstream 0.5kb upstream 5199 true scaffold_3: 20381074-20386272 Setaria italica
Seita.3G240000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 20385773-20386272 Setaria italica
Seita.3G240000 0.5kb downstream 0.5kb downstream 5199 true scaffold_3: 20380574-20385772 Setaria italica
Seita.3G240000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 20380574-20381073 Setaria italica
Seita.3G240000 1.0kb upstream 1.0kb upstream 5699 true scaffold_3: 20381074-20386772 Setaria italica
Seita.3G240000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 20385773-20386772 Setaria italica
Seita.3G240000 1.0kb downstream 1.0kb downstream 5699 true scaffold_3: 20380074-20385772 Setaria italica
Seita.3G240000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 20380074-20381073 Setaria italica
Seita.3G240000 2.0kb upstream 2.0kb upstream 6699 true scaffold_3: 20381074-20387772 Setaria italica
Seita.3G240000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 20385773-20387772 Setaria italica
Seita.3G240000 2.0kb downstream 2.0kb downstream 6699 true scaffold_3: 20379074-20385772 Setaria italica
Seita.3G240000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 20379074-20381073 Setaria italica
Seita.3G240000 5.0kb upstream 5.0kb upstream 9699 true scaffold_3: 20381074-20390772 Setaria italica
Seita.3G240000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 20385773-20390772 Setaria italica
Seita.3G240000 5.0kb downstream 5.0kb downstream 9699 true scaffold_3: 20376074-20385772 Setaria italica
Seita.3G240000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 20376074-20381073 Setaria italica
Seita.3G240000 10.0kb upstream 10.0kb upstream 14699 true scaffold_3: 20381074-20395772 Setaria italica
Seita.3G240000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 20385773-20395772 Setaria italica
Seita.3G240000 10.0kb downstream 10.0kb downstream 14699 true scaffold_3: 20371074-20385772 Setaria italica
Seita.3G240000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 20371074-20381073 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191653 5267 Panicoideae View MSA
124570074 5269 Grass View MSA
122044802 5273 Angiosperm View MSA
121346952 5274 Embryophyte View MSA
123424751 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.044        
cufflinks 1.114        
cufflinks 0.765       Low
cufflinks 0.697       Low
cufflinks 0.813       Low
cufflinks 0.97        
cufflinks 1.026        
cufflinks 0.935        
cufflinks 1.001        
cufflinks 0.966        
cufflinks 0.926        
cufflinks 1.378       High
cufflinks 1.322       High
cufflinks 0.961        
cufflinks 1.311       High
cufflinks 1.005        
cufflinks 1.461       High
cufflinks 1.297       High
cufflinks 0.72       Low
cufflinks 1.188        

0 Strain