Gene : Seita.3G247100 S. italica v2.2
Genomic Order:  2471 Name:  ? Seita.3G247100
Secondary Identifier:  ? PAC:32710229
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G247100 0.5kb upstream 0.5kb upstream 4587 true scaffold_3: 21215387-21219973 Setaria italica
Seita.3G247100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21219474-21219973 Setaria italica
Seita.3G247100 0.5kb downstream 0.5kb downstream 4587 true scaffold_3: 21214887-21219473 Setaria italica
Seita.3G247100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21214887-21215386 Setaria italica
Seita.3G247100 1.0kb upstream 1.0kb upstream 5087 true scaffold_3: 21215387-21220473 Setaria italica
Seita.3G247100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21219474-21220473 Setaria italica
Seita.3G247100 1.0kb downstream 1.0kb downstream 5087 true scaffold_3: 21214387-21219473 Setaria italica
Seita.3G247100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21214387-21215386 Setaria italica
Seita.3G247100 2.0kb upstream 2.0kb upstream 6087 true scaffold_3: 21215387-21221473 Setaria italica
Seita.3G247100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21219474-21221473 Setaria italica
Seita.3G247100 2.0kb downstream 2.0kb downstream 6087 true scaffold_3: 21213387-21219473 Setaria italica
Seita.3G247100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21213387-21215386 Setaria italica
Seita.3G247100 5.0kb upstream 5.0kb upstream 9087 true scaffold_3: 21215387-21224473 Setaria italica
Seita.3G247100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21219474-21224473 Setaria italica
Seita.3G247100 5.0kb downstream 5.0kb downstream 9087 true scaffold_3: 21210387-21219473 Setaria italica
Seita.3G247100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21210387-21215386 Setaria italica
Seita.3G247100 10.0kb upstream 10.0kb upstream 14087 true scaffold_3: 21215387-21229473 Setaria italica
Seita.3G247100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21219474-21229473 Setaria italica
Seita.3G247100 10.0kb downstream 10.0kb downstream 14087 true scaffold_3: 21205387-21219473 Setaria italica
Seita.3G247100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21205387-21215386 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026247 5273 Angiosperm View MSA
122184604 5267 Panicoideae View MSA
124569480 5269 Grass View MSA
121349608 5274 Embryophyte View MSA
123425538 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.287        
cufflinks 2.535        
cufflinks 4.509        
cufflinks 6.036        
cufflinks 9.147        
cufflinks 3.053        
cufflinks 10.358        
cufflinks 8.331        
cufflinks 10.713        
cufflinks 0.876        
cufflinks 0.941        
cufflinks 0.143       Low
cufflinks 0.143     Low Low
cufflinks 3.131        
cufflinks 0.067     Low Low
cufflinks 18.437     High High
cufflinks 0.324       Low
cufflinks 4.874        
cufflinks 8.708        
cufflinks 0.157       Low

0 Strain