Gene : Seita.3G245400 S. italica v2.2
Genomic Order:  2454 Name:  ? Seita.3G245400
Secondary Identifier:  ? PAC:32712040
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G245400 0.5kb upstream 0.5kb upstream 4009 true scaffold_3: 20997094-21001102 Setaria italica
Seita.3G245400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 20997094-20997593 Setaria italica
Seita.3G245400 0.5kb downstream 0.5kb downstream 4009 true scaffold_3: 20997594-21001602 Setaria italica
Seita.3G245400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21001103-21001602 Setaria italica
Seita.3G245400 1.0kb upstream 1.0kb upstream 4509 true scaffold_3: 20996594-21001102 Setaria italica
Seita.3G245400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 20996594-20997593 Setaria italica
Seita.3G245400 1.0kb downstream 1.0kb downstream 4509 true scaffold_3: 20997594-21002102 Setaria italica
Seita.3G245400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21001103-21002102 Setaria italica
Seita.3G245400 2.0kb upstream 2.0kb upstream 5509 true scaffold_3: 20995594-21001102 Setaria italica
Seita.3G245400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 20995594-20997593 Setaria italica
Seita.3G245400 2.0kb downstream 2.0kb downstream 5509 true scaffold_3: 20997594-21003102 Setaria italica
Seita.3G245400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21001103-21003102 Setaria italica
Seita.3G245400 5.0kb upstream 5.0kb upstream 8509 true scaffold_3: 20992594-21001102 Setaria italica
Seita.3G245400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 20992594-20997593 Setaria italica
Seita.3G245400 5.0kb downstream 5.0kb downstream 8509 true scaffold_3: 20997594-21006102 Setaria italica
Seita.3G245400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21001103-21006102 Setaria italica
Seita.3G245400 10.0kb upstream 10.0kb upstream 13509 true scaffold_3: 20987594-21001102 Setaria italica
Seita.3G245400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 20987594-20997593 Setaria italica
Seita.3G245400 10.0kb downstream 10.0kb downstream 13509 true scaffold_3: 20997594-21011102 Setaria italica
Seita.3G245400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21001103-21011102 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196112 5267 Panicoideae View MSA
124586941 5269 Grass View MSA
122045996 5273 Angiosperm View MSA
121344407 5274 Embryophyte View MSA
123380038 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.039     High  
cufflinks 15.459     High  
cufflinks 12.341     High  
cufflinks 10.085       Low
cufflinks 11.872     High  
cufflinks 14.621     High  
cufflinks 16.852     High High
cufflinks 8.409       Low
cufflinks 10.985        
cufflinks 9.894       Low
cufflinks 16.133     High  
cufflinks 16.646     High High
cufflinks 12.483        
cufflinks 13.018        
cufflinks 15.145     High  
cufflinks 15.515     High  
cufflinks 13.274        
cufflinks 19.071     High High
cufflinks 13.393     High  
cufflinks 13.192        

0 Strain